BtaINT0068642 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017124 | GPSM2
Description
Bos taurus G-protein signaling modulator 2 (GPSM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192355]
Coordinates
chr3:34545729-34550987:-
Coord C1 exon
chr3:34550770-34550987
Coord A exon
chr3:34546085-34550769
Coord C2 exon
chr3:34545729-34546084
Length
4685 bp
Sequences
Splice sites
5' ss Seq
CAGGCATGT
5' ss Score
2.05
3' ss Seq
AATCTCTTGTGAATTTCTAGGGG
3' ss Score
7.22
Exon sequences
Seq C1 exon
CACCACCAGTTTCTGTGCTGTCCCCCAACACAGATGAATTTTTAGACCTTCTTGCCAGCTCACAGAGCCGCCGTCTAGATGACCAGAGGGCCAGTTTCAGTAATCTGCCCGGGCTTCGTCTGACACAAAACAACAGTCAGTCAGTACTTGGCCATCTGATGACTAATGACAACAAAGAGCCTGAGGAAGACTTCTTTGACATCCTCGTCAAATGTCAG
Seq A exon
GCATGTCTGCATAGTTTTGTCATTCTGTATATAGCTCAGATGTTGTTGAGAACTTTTGCAGTATTATGATTCTAACTTGGGAAAAGCTCATTGTATATTAGTGAGGCAATCAGTTGATTATTCGGGGAAACATTCCCTTGTGATAGCTTCTTCTTTTGTGTTCCTTTTGGCTGTGAGGTGAGGTGTTGCTGATGACTCCCTCTGAGCTGTGGTAGACACCGCAACAGAGACCTGAATAAGGTAAAGCAGTGAATATTTACTGAAAGAGCATTCCGTGCAGAGACAGCATGTTCAAGGAATGGCAAGGTGGCTAGTGTGACTGGTATAGGGTAAAAGGTAGAGGAGAGCTTATAGGATGAGGATGAAGTAGTCAGAGCCTAGATCATAGACTCTTATAGGCCATGATGAGGTCTTGTATTCCAGATGTGACAGAAAGACATTAGAGGGTTCTGGGGGATCATCCTAACAACTGCTGAAAGAATGTGATGGCAAGGGTGTCAGAAGGAAACTAATGTGCTAATAAAGCAAAAAATATTGGTGACTTGGACTAGTGTGGTAGCATAGTGGTAAGTGGTCAGAATAGGGACATATTTTTGAAATTAGGGTTGGTTGGCAAGATCTGTTAATAAACTAGATGGAGGGCATGAGAAAGAGACTTCAGGATGATTCCTACCTTTTCGGCTTGAATAACTGAGTAAATTTCAATAAATTCAGTAAATTTTAGTAAATTCAGTGCCATGTACTGAAACAGAGAAGAAGAAGAAGAAAAAAAATCCTGACAGAAGAAAAGCCCTGGACTATGGCTTCATGGGTAAATGCTACCAAATGTTTAAACAACACCAATTCCAAAAATTGAAGAAAGGGAACACTTCCTATGTCATTCTATGAGGCAAATACTGCCCTGATACCAAAGCCAGTTAAGACTCTATAAGAAAACTACAGACCAATATCCTTTTTGAATATAGATGCAAAAATTAACAAAATACTAGCAAACAAAATCCAGCACCATGTTAAAAGGATTATATGCCATAAAACTTGATGTGGTTTATTTCTAGAATCCAAAGATTGTTCAACATATGGAAATCAACCAATGTAATATACCACAATAATGAAATGAAGGAAAAAACAATCATCTCAATTGATGCAGAAAAATTATTTGATGAAATTCAACACATTTTCATGATAAACAAACTAGGAATAGCAGGAAACTACCATGACATAATAAAAATCATTTACCCCAGCTATCATCATATCAGTGCTCAGTATGTGTGATCATCATACTCAGTGAAAAAAGACCGACAGCTTCAGATCAGGAACAAGACATGGATGCCCACTTTGCCACTTATATTCAACACAGTACCAGAAATTTTAGCCAGTTAGGTAAGGAAAAGAAACAGAAGGCATCCAAACTGGTAAAGAAGTAAAATTGTCTCTGTTTTAGAGATAACAGGGTCTTTGTCTTTTCCTTTGGCTGCACCACATGGCATGAGGGATTTTAGTTCCCCCAACTAGGGATTAAAGCCATGATCCTGCAGTACAAGCATGGAGCCCTAACCATGGGACCACCAGGAAATTCCCTGGAAATGACAGAATCTTATGTGTAGAAAATCAAAGATTTCACCAAGAAAAAAAAAGTTAGAAAGTCACAAAGTTAAAAGATATAATATCAACATCCACAATCAGTTGTGTTTCTATAGGCTAATAATGAATAGTCCAAGGGAAATTTAAAAAAACCGTTTCAATTACAGTAGGCTGTAAGTAGTATCAAAGAGAATAGTTAGGAATTAACCAAGAAGGTGAAAGACTCATACAGTGAAAACTACAAAATATTTCTGATAGAAATTAAAGATGACATAAGTCTCACGTTCATGGACTGTAAGACTTTTTCCTTCAGTGACGCCTTTTTACATAAATAAAAAATCCATCCGAAAATGCAGATGGAATCTCAAGGAAACCCAAATAACCAAAACTGTCTTGAATAGGAAGAACAACATTGGAGGACTCACACTTCCAGATTTCCGAATTTACTACAGAGCTACAGTAATTAAAACAGTAGCCCAGAAGCAAACACTCATATATATATGGTGAAACAATTTTCAGCAAGGTTGCCAAGACCATTCAGTATGGAAGGAATCTTAACAATTGATGCTAGGAAAACTGGATATCTACATACATACATACCTAATAACCATATACAAAAATTAACTCAAAGTGGATCAGTGACCTAAATATAAGAGCTAAAAACTATAAAACTCTTAGAATAAAACATAAGGGGAAAGCTTCATGACTTGAGATTTGGCTATGGTTTCTTGATTATAACACTAAAGGCATAGGGAATAAAAAAGAAAAAGACAAATTGGACTTCATGAAAGTTTAAAACTTCTATGCAGAGACACTATTAACAAAGCACAAAGGCAACCCACAGAAAATATTTGCAAATCATGTAACTGATAAAGATTAATCCAAAATATAGAGAACTCCAAAAGCTCAACGACAACAAAAAACCTGATTCAAAATGGGAGAAGAACACAAATAGATCCTTCTCCAGAGAAGATATACAAATGGCCAGTAAGCACAGGAAAAGATGCTTGACATCATAAATCATTAGAGAAAGGACGATCAAACCACAGTGACATACCACCTTACACCCATTAGGACAGCTATCGAAACAAACCAAAAAATGCAGAAAATAGCAAATGTTGTTGTGGATGTGGAGAAATTGGCACCCTTGTGCATGGCAGGTAGGATTATAAAATGGTGAAGCTCCTATGGAAAACTCGATGCCAGTTCCTTAAAAAATTAAAAACAATTATCATATGATCCAGCAATCCCACTTCTGGGTATGACTGAAAACGAGGACACGAACAGATACTTGTTCACAATATGATACACCCATATTCACAACAGCCAAAGCTTGAAGCAACCCGAGTGTCTACCAACAGATGACTGGATAAACAAAACGTGATGTACTTACACAATGGAATATTTTCGGCCTTAAAAACACACTACAACATGGATGAACCTTGAAGCTATTATGCTGAGAAATACAGTCACAAGAGGACACACTGTGTGATCCCACTTGTATGGGTCAGTTAAGAGAGACAAAGGAGAATGGGGGTTGCAGAGGCTAGAGGGAGGGGAGGCTGAGGAGTTGTTAATAGGTGTAGAGTGTCAGTCTTGCGAGGCTAAAAAAGTTCTGGAGATGGATGGTGGTGATAATTACACAATATGAATGTACCTGATACCGAACTGTACACTTAAAAATGGGTAAAATGGTAAATTTATGTTATGTTTATTTTATCTCAGTTTTTAAAAAAATGATTTACTGGAAGAGTACTGGAGAGCCTGATCTGGAAAAATAGGAATCAGTGGTCAACATGGGATATTAAAGTGATTTCAGAGATGGTGCAGTTTATGAGAATAACTGTCTGGCCTCTGACCATGAGAGCTAATGGATAAGGCAGAGGGTAAGGATGAGAACACCAGGGGAGAGGAGGTCTAGGAACTGAAGTGCCTGAGTGCTGGATGAATTAGAGGACAATGACAGGACCAAGAACTGGGACAGGAGAGATGATGAAGAGTGAAGCAGGTGTGTGTGGGCACCAGCGTGGTGCTGACGAGTGGCCAGTCCACCACTGCATCCGCACGGGATCGCGCGGCTAAATGTGTAGGCACATCGGTGCACAGCGCCTGGCAACACAGAGGGCACTCAGACGTCAGCTGTCACAGTCCTACTCTTCCTCGTAGGCTACAATACCAGACACCATCCTGTAGACTTTTAAAGTGCTTTTATTTTTTATTTGATCAAAAACATTTCTAACATACTTCTAAGAACCATAAGCTAGAACTTAAAGATTTAAATGCTTAAGACCAAGGGTAGGCAAACTTTTTCTGTAAAGGGCCATATAGTGAAGTGTGAAGTCGCTCAGTCGTGTCCAATTCTTGGCGACCCCATGGACTGTAGCCTACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAATAGTCCTGGAGTGGGTTGCCATTTCCTTCTCCGGGGGATCTTCCCAACCCAGGGATCAAACCCAGGTCTCCCACGTTGTAGACAGACGCTTTACTGTCTGAGCCACCATAGAGAAACTATTTTAGGCTTTTTGAGCCCTTTGGCCTTTGTTGCAACTGCTCAACTCTGCCATTGTAGCAGGCAAACAGCCATACACAGTTCAAAACAAATGAGCACAGTGTTGAAATGAAAGTACTGTTGTTACAAGAACAATGGGCAGTGGACTTATGGTTTGCTGACCCTTGGCCAAAGACAGTGTTAAAAGGAAGCGATGCAGAGTTTCTGTACCTCACATTACCTTTCTAAAGATTTGGTAAGTTTTATTGGGTGATGCCTATTATGGTAAGATTATAATCTTGAGCTGTCATTGTGGACACAGGTGACCTTGTGTCTTAACTACTCTTACCAAAGCCATGAAGCTATGGCTATACTTCTGTGTACTATAACATAACTGGCATATGCTGATTATATAAGTCATTTCAAAGAAACAATCTTACTAGTTTTCAGATCCAAAGACTGAGTAAATTTCTAAGCAGTTCTAAAAGGCAGTAAACATTTAAAGCTACACTTCTTATTGTGAATGGTAGACACAACATACCTTGGTGCTCACCTTATTTGTCTTTTAATCTCTTGTGAATTTCTAG
Seq C2 exon
GGGTCCAGATTAGATGATCAGAGATGCGCTCCACCACCTGCTGCCACAAAGGGCCCAACAGTACCAGATGAGGACTTTCTTAGCCTCATTTTACGGTCTCAAGCAAAAAGAATGGATGAACAGAGAGCTCTTTTACAAAGAGATCAAAACAGAGACACTGAATTTGGCCTCAAGGACCTTTTGCAGAGTAATGCTTTGTTGGAACTTGAAAATTCTGGGAAAAAATAAGCAAACCACTAGTATACTGTTGAATTTTTTTTTTTTTTAATGACCTTATTTCCTTTCAGAACACTGCAGGGAAATTCAATCTACTACTTTTTTCCCCAAAAGGAGAAAGTATAGCACTAAACTACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017124:ENSBTAT00000022762:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.466 A=NA C2=0.480
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=31.5),PF0218812=GoLoco=PU(47.8=15.1)
A:
NA
C2:
PF0218812=GoLoco=PD(43.5=13.2),PF0218812=GoLoco=WD(100=30.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]