HsaINT1014798 @ hg38
Intron Retention
Gene
ENSG00000121957 | GPSM2
Description
G-protein signaling modulator 2 [Source:HGNC Symbol;Acc:HGNC:29501]
Coordinates
chr1:108924000-108934545:+
Coord C1 exon
chr1:108924000-108924214
Coord A exon
chr1:108924215-108929700
Coord C2 exon
chr1:108929701-108934545
Length
5486 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TCTCTCTCATAAACTTCTAGGGA
3' ss Score
8.6
Exon sequences
Seq C1 exon
CATCATCTGTTCCTGTGGTATCCCCCAACACGGATGAGTTTTTAGATCTTCTTGCCAGCTCACAGAGTCGCCGTCTGGATGACCAGAGGGCTAGTTTCAGTAATTTGCCAGGGCTTCGTCTAACACAAAACAGCCAGTCGGTACTTAGCCACCTGATGACTAATGACAACAAAGAGGCTGATGAAGATTTCTTTGACATCCTTGTAAAATGTCAA
Seq A exon
GTATGTCTGTATATTTTTTTCGTTCTGCATACAGCTCAGATACCACTGAAAACATTGGTAGTGTTATAATTCTCATTCAGGAAGGGCTTATTTTGTATTAGAGAGTTATTATTGTCCATCATTCAGTAAAAAATTATTGAACACCGATTATGTTTCAGCTGCTATTCTAGGCATCGAGGACACACTTGATTTTTAAAGGATCTTACATTTTAGGAGAGACGTGTGTGTGTGTGTATATATATAGAGAGAGAGTATATGTGTGTTGTATTAGGTAATTATGCTTGCTATGAAGAACTTTAAAGGAGGATAAAGGGGTAGTGGGTAAGCAAAGGTGTTGGTGGTAGGGGGAGTGTCTGTTTTAGGTAGGGTGGTTAGAGAAGACCTTTCTGGATTGTCATTTGAACAGAGACCTGAATGCAGTGAAGCAGTCAGCCATGTGAGTATCTAGAGAAAGAGTATTCCATGCAGAGACAGCAAGTCCCCTCTTGGATATAAAAGCTTAGCCAGTTCAAGGAGTGGCAGATGTGACTGGCATGGGATGAGTAGGGGAAGGGAAGAGTTGTACAAAATGAGGATGGAGAAGTAATCAGGGCCTAGATCATCTAGGCTTTTGGAGGCCATGATAAAGTCGTGTTTTAGATGTATTAGGAAGGTACTGGGAGTGTCCTCAAAGAGGATCCTGGCTACTGATGGAAGAACGTAGAGTGGCAAGGGTGTTAGTATGAAAACCAGCTAGAAAGATTGTATGGTGATGCAGGCAAAAAATATTGGTGATATGGACTAGAGTGGTAACAGTGAGAAGTAGTTAGCATAGGGCTACATTATTAGCTATTATATCAGTTATATATTATGGTTAGTTGGCAGGACCTCTTAATAAATTGAGTAGAGGGTTTCAGGGAAAGAGAATCAAGGATGACTTATACCTTGAATAACTGGGAAATGAATGGTTCTATTCACTGAAATGGAGATGACTAGAAGAAAAGCAAGTTTGGAGAGAAAAAGCAAGAGTTCTGTTTTAGACATGTTAAATTTGGTAAACTGTTAGCCAGTTCAAGGAATGGCAAGTGTGACTGGTATAGACAATGAAGTAGAGGTGTTAAATAGGCAATTTGATGTAAAATCTGGAGCCCAAGGGAGAAGTAAATTTGGGAGACATCAGCTTATAGCTGGTATTAAAGCCCTGGGAAGAAAGTACCTAAAGAATAGGACAGGAAGACTAAGCCCTGAGCATTTCAAAATCTACTGGTTAGATGGAGGAAGATGAGCTGGCAAAGAAGCAACAGCCAGAGAGTTGGAAGGATACCCCAAGGGTGGGCTGGGGAGGGGTGGGGTGTGGTGTGGTGGAAATCAAGTAAAGAGTGTATCTTAAGCAGTGCTCAACTGTGGCAAATGTTGCTAAGAACCTGAGTCAGATGATGACGGAACTACTAGATTTGATAACATGGAGATTATGAATAATTTTGAAAGATACTGTTCCAGTGGCATGGTGGGGACAAAGGATTGAGTGGGGTGAGAAAATGGGAAGTGTGAAAGGGGAGATAGTAAATATAGAAACTTTAATGGGTTAAATGGACCATTAGCTAGAAAATAAATACAAGGCAAATGTGGGGTTTTTTTTTTTCTTTTTGGGGGTGAAAACGTAGTTTATCTACAGATGGAAATGGTCAAGTAGAGAAGAGTCAGTGATGTAGGTAAGTCTGGGGTAACTGAAGAACACAGTTTTTGTGTAGGTGAGAGAGGGAAAGCAGAGTACGGATTTGGAGATGGGAGCAAGTAGGAATTCTCTCGGGCTGCTTTTATTTTCTCACCAAAGAAAGAAGTAGTCATCAGTTAAGATTGGAGTTGGGGAGCACTATAAATTTGAAGAGAAAGGAAGTGGGAAATAGTTGACTTAGAGAAACTGAAACTAGGGGGAAAGTATTAAGAACACTGTGCTGTGCTAAGAACCCACCTGAGGTTCAGTCACTGGAAGTAAAACTAGTGAGTGCAATTGTGTATTTTATCCAGTCATGGCCAGCTGCTTGAGGCACAGAGATAAATCAAGACTGCTATTTTTCCAGGAGAATGGGATTCAGGGGAGAGAATGGTAGTTGAAGACATGTGCCAGGAAGTGATTTTAATAATGGACTTAAGAATCTAGGCTGTAAGAAGGAAAATAAAGAAATGAACACTTCATAACTCATTCTGTGAGGCCAGTATTGCCAATACCAAAGCCAGACAGACACTACAAGAAAAGTACTGACCAATATCCTTCATGAATCCAGATGCAAAATCAACAAAAGCCTACAATCCAAATTTAGCAGCGCCCCTGCTGTAAAGGATTTTACACCATGACCAAGTGGGACTTATTCCCAGGACGCAAGGACTGATTGTTCAACATGTGAAAATCAATCAGTGTAACACATAATATAAACAGAATAAAGGGAAAAAACACATACAGGAAAAAAATGACAATTCAAAACTCTTTCATGATAAAAACTTAAAAATTAGCAACAGTAGGAAACTACCAGAACATAATAAAAGCCATATATGAAACATGTACCGCTGACATCATACTCAATGGTGACAGACTGAAAGCTCTCCTCCAAGATCAGGAACGAGATCAGAATGCAGGTTTTTGCCACTTCTATTCAATGTAGTACTAGAAATTCTAGCTGGAGCAATTAGGCAAAAAAAGAAAAAAAGGCATTCACATTGGAAAGGACAAAGTATCAATAAAATTGACAGAGGTAATCAACAAGTTCAACAAAGTAGCATGATACAAAATCAACACAAAAATCAGTTGTGTGTTTATACACTAACAATGAACAATTGGAAAAGAAATTTAAAATTCCATTTAAAATAGCATCAAAAAGAATAAAATACTTAGAAATTAATCACTGAGGCAAAGACTTGTATAATGAAAACCACAAAACATTGCTGAAAGAGATGAAAGAAAACAAATGGAACAATATCCCATGTTCATGGATTAGAAGACTTAATAATGTTAACATTTCGATACTATCCAAAGTGACCTACAAATTCAGTGCAATCCCTGTAAAAATCCAAATGACTTTTTCCTCCTACAGAAATAGAAAATATAGCCTAAAATTCATATAGAACCTCAAGGGATCCCCAAATATCCGAAATAGTCTTGAGAATAAAGCTTTAGGGCTCACATTTTTTTATTTCAGGTTATTACAAAGCTACATTAATCAAAGCAGTGCAGTACTGGCATAAAAGACAGACATATAGACCAATGGAATAGAATACAGATCCCAGAAATAAACCCTTGCATGTGTGGTCAAATAATATGCAACAGGGGTGCCAAGACCATTCAGTGGGGGAAAAGACAGTTTTATCAACAAATGGTTCTGGGTAAACTAGAGAGCCACATACAAAAAGAATGAAGTTGGACCCTTACCTAATACCATATGCAAAACTCAAAGTGGGCCAAAGACCTAAGCATCAGAACTAAAACTATAAAACTCAAGAGGAGCATGTGGTGGCTTATACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGAGGATTGCTTGAGCCCAGGAGTTCAAGACTAGACTGGGCAGCATAGTGAGACCCCATCTCTATAAAAAAATTTTTTTAAATTAATGGCACACACCTGTAGTCCCAGCTACACAGGAGGCTGAGGTGGGAGGATCACTTGAGCCTAGGAGTTCAAGGCTGCAGTGAGCCATGATCACGTCACTGTGCTCCAGCTTAGGCCACAGAGTGAGACCCTGTCTCTAAAGGGAAAAAAAAGGAAAGCCTCATGGCATTGGGTTTGGCAGTGATTTCTTGGTTATAAAACCAAAAGAGTGAGCAGGGAACAACAACAACAACGTAGACAAATTGGACTTCATAATTAAAAACTTGTGCATCAAAGGACATTATCAACAGTAAAAAGGCAACCCAACATAAAATACTTGGAAATCACATATCTGATAAAGGATTAATACCCAGAATATATAGAAAACTCCTAAAACTCAACAAAAACCAACCTGATTCAAAAATGGGCAAAGAACTGGAAGAGGCATTTCTATAGAGATAACAAGAGGCTAGAATATGACCATGGGAGCCAAATGGCTAAGGCCGAAGTGAAGGATGAGGACATTCAATCAGAGGAAGTCTAGGAACTAAGTGAGGAAGTCTAGGAACTAAGTGCCCAAGTGTTGGGTTAATTGGAGGACATTGAAATTATCAATTTATGACAGGAGAAATGAATGAGCCAGGTATGTGTGGAGGTGGCACTCACTTAGGAGGGCAGTAAATAACTGCACCCTCTGAGGGTTGTGGGCTTAAATGTTCAGGGATCTATGTCTTATCACAGTCCCTAACAATGTAGTGCATATTCAAATATCAGCTATCACACTTCTATTCTTACTCTTGAGCTACAATGCCAGAAACTATGGTGTATACTTGTAAGTGCATGTATTTTTTGACAAGTAGCATGTCTAATATAAGAATCATAATACTCAAACTTGAAAGAAAAATTCAGAGACCAGGCTCATGCCTGTAATCCCAGCATTTTGGGAGGCCAAGGCGGGTGGATCACTTGAGGTCAAGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCCATCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGACGCATGCCTATAGTCTCAGCTACTGGGAGGCTGAGGCTGAAGAATCACTTGAACCTGAAAGATGGAGGTTGCAGTGAGCCAGGATCACACCACTGCAGTCCTGCCTGGATGACAGAGCGAGAATCCGTCTCAAAAAAAAAAAAAAAAAAATTCATTCTGGGCTATTTCTTAACAGATTTAACAGCCTAAGACAGAGGCAGGCAAACTTTTTCTGTAAAAGGCCAGATAGAAAATATTTTAGGCTTTGCCGCCCATATGGTATCTATTGCAACTGCCCAACTCTGCCATTTAGTAGGGAAGCAGCCATATAGATAGTATATAAACATATGTATTGATGGGAAAATGAAAATGACTTCATTTACAGAAGCCGGCACTGGGTTACAGTTTGCTGTCCCCTAGCCTAAGACGTGATTTTTTTAAGGTAGTTCCTCATGGGGTTTGTACATATTTCTAAAGATTTGTTAAGTTACACAGTTGATGCCTGTTAGATTATAACCTTGAACTGTCATACTTAGATACAGTTGACCTTGTCTTTTATCCTTGTGACCAATTATAATTAAAACAGTATGACTTAACATAATGCACGTACTAAACCAATGAAGCAGCTATACCTATATAAGCCATTTTAAAGGAAAAATTTTATGCAGTTTCAGGTTTAAAGATTATTTCTTTCAGAAATCAGGCTGGGAACTAAAGAGAACAATATAAAAACAAAGATTAATTTCTGAGAAGCCCCAAATAAAAGTTTACAACTGCGTTTTCTTGTTGTGACTGAGAGATTTAACATAGCTTGGTGCTTTCTTTCCCACAGTATGTCTTTTAATCTCTCTCATAAACTTCTAG
Seq C2 exon
GGATCCAGATTAGATGATCAAAGATGTGCTCCACCACCTGCTACCACAAAGGGTCCGACAGTACCAGATGAAGACTTTTTCAGCCTTATTTTACGGTCCCAGGGAAAGAGAATGGATGAACAGAGAGTTCTTTTACAAAGAGATCAAAACAGAGACACTGACTTTGGGCTAAAGGACTTTTTGCAAAATAATGCTTTGTTGGAGTTTAAAAATTCAGGGAAAAAATCGGCAGACCATTAGTTACTATGGATTTATTTTTTTTCCTTTCAAACACGGTAAGGAAACAATCTATTACTTTTTTCCTTAAAAGGAGAATTTATAGCACTGTAATACAGCTTAAAATATTTTTAGAATGATGTAAATAGTTAACCTTCAGTAGTCTATTAAGGCATTAATACTTCTCTGGACATGCGCGTTTGAGGGTGGAGGGGTCCTGTAAGGTGCTTCATCGTCTGTGATTACTGCTTGGGATGTGTTCTTTGGCAGCTTGTGAGATTACTTTACCTAGTGTTTATAAAGTAGGAAGTTAAGTGAATCATAGATTAGAATTTAATACTCTTATGGAAATAATTTTTTAACATCTTAATTGACAATGGCGTTTTTTTATACATAACCATGGATGTAGTGGGAAACAATGTTGTTTGGTAAAAATAATGTACTTGATCAATGTAAAAAAGTATATAAAATAGTCTTACTAAAAATCTAGGTTTTTTTTTCCTCCATGAAAATCTGTTTTTTTAGGCCAAAGTCAGTATAAAAGAAACTCTACTTCTTGGGCTGGGCATGGTGGCTCATTCCTGTAATCCCAGCACATTGGGAGGCTGAGGCAGGAGGATCGCTTGAGGCTAGGAGTTCAAGACCAACCTGGGCAACATAGACCCCCGTGTCTATGAAAAATAAATCAGCAGCCAGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGCGGATCACTTGAGGTCGGGAGTTTGAGACCAGCCTGGCCAACATAGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCATGCGCCTGTAGTTTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCCTGGGAGGCAGAGATTGCAGTGAGCTGAGACCAAGCCACTGGACTCCAGCCTGAGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAACAGCAAGCATGCTGGCACACACCTGTAGTCCCAACTGCTTAAGAGGCTGAGGCAGGAGGACCACTTGAGCCCAGGAGGTGGAGGCTGCACTGAGCTATGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACCCTGTCTCTAGAAAACAAGTATCTTTTGTGTGTTTTGGGCTGTTTAAAAAAATTATTTAAAATGGTCTCTTCTGTTCCATAATACTGCTGTAAAACAAACTTTTCTAAGTTCTAATATAAAAACAAAAAACAAAACCCATGTGGTTAGGTCAAGAACCTAGGACACATAAACAAACAGAAAACAGATGAAAACTCACAAAAATTAAATATGAAAGAAAGATGTCAGCTAGAACCTTAGTTGTCATTAAGCTTTGTCTTCCTTATCCCAGATATTGAAGGCAGTTTACAAGGGGATGATAACAAAGTAACTAACTAACTGTAGCAAAAGACAAGTATGGGACAGACTGGGACCTGGAGTAACACTGGATCACAGACTGCAAAGGCCCACGCTTGGAACAAGTTGCCAACTTGTTTCACTCTGCTTGCTTCAGACTGTGCACAGCTGGGATGGGATCTGGGGATGTGGACCCCTATTCTTTCAAAAAGTCATTCAGGTGATTTGGATGGGCAAATAGAACTATTTCTCTAATGGCCAATGTTTTTTAAGAGTCATAACCTGGAATTAATTACATTAAGTGCTCAGCTAAAAAAAAAAAAAAAGTTCTAAATTACAACCTGGATTACATTATGTTTCATGTATACTATAAGGTATGATGTCCTGGATAGCATTTTAAAAACTCAGGTAAGTTTCATGGGGTTCTTATAAGAAAATTCAGTTAAGACAATATACCAAACCACAACGTAAAAAGTTTGTGTATACAAACTTTTTGTATTATTTGTACACAAAGTACAAATTTGTATTTGTACACAAAGTACAAACTTTGTGTATTATTTTGTGTATACAATAGTTCTTACAGCCTGTAAACATTCAACATTATTCCATTTAAACATTGTTTTTAACAGCTGTCTACCCTGTTCTGATTTTCCTAAAAGCTTCACACTATATAGGCTGGGCACAATGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGACAAGGGCGGGTCACTTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACCCCATCTCTACTAAAAAATACAAAAATTAGCCAGGCATGGTGATGCACATCTGTAATCCTAGCTACTCGGGAGACTGAGGCAGGAGAATCTCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTACCACCTCACTCCAGCCTGGGTGACAGAGCAAAACTCTCAAAAAAAAGTAAAATTTCAAAAAAGCTTCACAATATAAACCTTAATTTTAATGACATATTGGCTAGTCAATAAACAAGTCTTATCTCATCTCATCTCTTTTCTGATAACAAACACCCGATGTGTTCAATTTGCTTTCATATTTAAGTCTTTCCTGAATTGCTGTCATCATTCAACAACAGTTGCATGTCGCCTTGCTAGCTGTCAAAGTAGACTTCATCCCCAAATGGATATCTGTAATGAAAGAATACAAAGGTGAAATTTTATTTAAAAATTTTTTAAAAGAATTTGGTTTTGGATTAAAAGGCATGCAAGCAGCATTAATTCCACTCACAGTTACAGTCTATCACCTGGGGCATTCACTACTTTTCAGAGTCAGATCACAGTTCAAAAGACAGCTCTCACCTTGGGGGCATATTCCCCAAGTCAGTGTGAACATGTCTTGTCCCAAGAGGACACTTTATACGCATGGATGTTCACAAATTTATTCTAAACTGCAGGTGTCTGTCAGGATTCATTTGTTAAACATGTCCTCTGTGTTAAAAATCCTAAAATCCTTTTGCATTTCTTAGAAAAAATCACGTTTCTGATGAAATTCTAAAGATGTTTGCAATATTAAACTAGAATATATTAACATGTATAATTTTGAGACAAGGTCTTGCTCTGTCACCCAGGCTGGAGTACAGTGGCTCGATCATAACTCACTGCCACCTCACGATCCTCTTGCCTCAGCCCTCCAAGTAGCTGGGACTACAGGCGTGTACCACCATGCCTGGCTAGTTTTATTTTTAGTACATAGCCTTGAACAACTGAGCTTAAGCGATCATCCTCCCTCAACCTTCCAAAGTGCTAGGACTGTAGGCATGAGCCACTGCACCTGGCCTAAAATTACATTGTTACAGGCACGTAAGTAACACTTCCTGGATCCAAAAATGTGTATTCTGCATTTCAACAACTGAACTTAAGCGATCATCCTCCCTCAACCTTCCAAAGTGCTAGGACTGTAGGCATGAGCCACTGCACCTGGCCTAAAATTACATTGTTACAGGCACGTAAGTAACACTTCCTGGATCCAAAAATGTGTATTCTGCATTTCAACAACTGAACTTAAGCGATCATCCTCCCTCAACCTTCCAAAGTGCTAGGACTGTAGGCATGAGCCACTGCACCTGGCCTAAAATTACATTGTTACAGGCACGTAAGTAACACTTCCTGGATCCAAAAATGTGTATTCTGCATTTCATATTAAAATAAAAAAGCAAGTGCTTGGGATACAAATATCTGCATGAAAATTTAAAGACTTTATTCCTGACTGGTATCACTTTTAGTAAGCAGTTGAACATAACTTGTAGTGTGAATATGGTTAAAACAAAGGACACCTGATGTCTGTGAAGTCTGCTAAGGACAGGTACAAAATTTATGCATTGCTTTTTAAAAAGTTTAAAATGAGGAATGCTTTTGATAATCAGAAAGACTAATGTAAAGTGCTGACTGATGTCCTGTCTGCAGTTAAGGAAGACACCCAACTCTCTTCTTCCTCATCATGGTATTCTCTATGTATAGATCTCTAAAAATGCAAACTTCCTATGGACAAGACAATATGATTTGCTATAATATGAATTAAGATATGGTAATATCTAATAGTCTCCACTGCTAGGATTCTGAGTAACACAAAAAATAGGTTTTATAAAAAGCCCATGCACTTCAATTGGTGGGGGAAAAGAATAAAGTCATTTTCAGTCGACTGACTCTGTAAAACAGATTACCAATATAACAAGCTATGTTATCTAAATTGCCCTGGCAGTCTTCAGTTTTCTCTAAGTAAACAAAGTAAAAGGAACAATAAGGATGCAGGCGTAGTAATAGCTGTGGAAAAGATGAAACTACAGCCACAGTGACCTGTGGGCAGCCTGCGTAGAGATAAGCTGAGGTGTCAGTCAGACTGATCCTGGTAACGATACTCCATGGCTGCATGAAGATGCTGGAGGCATCAAGTGGGTGGCCTTAACTCTAGTGGATTCACTAGGCAATGTAAATTGGTTAGTGGGTTCCCGTAAGTGCCTGTAACAATAAAATTTCTTTTTCAATGTCCCCAATTCAAACTGGCCTCCTTAACTATCCAGAATCAGTGATGCCTGTCATCTGTTCATCTTAAAATAAACACTTCTTACTTTATGGGATGTAAATATCAAAGAGAAGATGAAATGAAAAGCTTTTACATATATAACGTGTTTGTTAATTCTAATTGTCAGTAAAAATGTGAATGTTGAAGTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121957:ENST00000406462:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=NA C2=0.456
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=31.9),PF0218812=GoLoco=PU(47.8=15.3)
A:
NA
C2:
PF0218812=GoLoco=PD(43.5=12.5),PF0218812=GoLoco=WD(100=28.8)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains