RnoINT0067133 @ rn6
Intron Retention
Gene
ENSRNOG00000012149 | Gpsm2
Description
G-protein signaling modulator 2 [Source:RGD Symbol;Acc:1560967]
Coordinates
chr2:211480400-211482335:-
Coord C1 exon
chr2:211482118-211482335
Coord A exon
chr2:211480824-211482117
Coord C2 exon
chr2:211480400-211480823
Length
1294 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CAATTTCTCTCCATCTCTAGGGG
3' ss Score
9.87
Exon sequences
Seq C1 exon
CACCGTCGGCTTCTGTGGTATCCCCCAACACCGATGAGTTTTTAGATCTCCTTGCTAGCTCGCAGAGCCGCCGTCTGGATGACCAGAGGGCCAGCTTCAGTAATTTGCCAGGGCTCCGTCTGACAGAAGGCAACAATCAGTCCGTACTTGAGCGCCTGATGACAAATGACAAGAAAGAGCCTGATGAGGACTTCTTTGACATCCTTGTAAAGTGTCAG
Seq A exon
GTAAGTGCACATTCAGTCCATCCTGTAGACTAGCCCTGCGCTGCTGACAGGCGCTGGGCTTCAGGGAAGTGCTGAGACGCCACTCAAGGGGAGGGAAACACAGCTGAGAATGCAGGAGGCTGAAGCTTGGGTTCCCTGAGCATCTGGTCACTGCTGGGAAATGAAGTGTCAGGGTCCTTAGGCCTTGAAGAGGCCGGCTGGGACCCAGTGCTCCCAAACTCCTGGACATCCAGGTGCTGCTGGATCAAGAATTGGGCACAGAATTGGAAGCCTTTGGGCTGAGGGTGATGAGAGTCGGCCCAGTAAATGGGAGCTCTAGCTTATTTCATTGGTGAAAGTCCTGAGCTTAGCAGTGGTTGGCTGGGAGCAGAGAGGCCTTCTGCAGGAGACTTGGGCTGTGGCTTGGTAGTCAAAGGATTTCTCCATGCTCCCCACAGCAGATCTTGATGAAAGAGACGGTTTATCCATATATTTATTGACTGTTCATTGTAGAAAATGGGTCCACCTTCTCAAAGTGGATCAGAGATTAAATGCCTCTTTCAGGGAAGGGAAGCTTATTGGCTAAGCCCTCAGGTTCTCTAGGTACCTCATTAGCATGGAGAACTGTTTTGGTCTATGTGACATGACCACAGGTCACATCTCCTGTGTGAGAGGTGTGGCACGTGTCCTAGGCCAGCAATCTAGTAGGGAGGAGGGACACACTTACCATGTCTGGGTGCTGGGGACCAGTCAACCGTACCAAGATTCCTGGCATGGTCTACTGTCCCACAGGGCTCACTTGTGGATCAGGCATTATTTTCTTGTCTGTCATTCAGAACACCATTAAACGCCTTTGTTACAGGGAGTTTGGGGTATTGGGGTATCAGGATGCTCTTGATTTTGTAGGGCCGTGCATCTTGGTGGACAGAGGCAAGTGTGTAAGCAAGAGACAGATGAAAATAAAGGTTGAAGGGGTAGTGGGTGATCAGGATGGTAGTGACTTGGAGAACATCTGTTTTGTATAGTTAGAAAAACCCTTCTGGTTGCCATTTGAATCATTTGTCCAAACAGCTTCAAACGTAGGCAGTAGATTATAATTTGTTGGCCCCTGGCTTAGGCCATTCTAGAAACATGTTATATAAGTAAGATTCAGTGTCGGATTATTTGTGACCAATCGTGGTAGTGTAATATACTTAGGAAGCCCATTTTACATAATATTTACTGTATTTTCATTCTTTCAAGTTTCAGGTCTGACAGATGAGAGCTTGGCATTTTCCTTTCTGACCATTACGTTTCAATTTCTCTCCATCTCTAG
Seq C2 exon
GGGTCCAGGTTAGATGATCAGAGATGTGCTCCACCACCTGCTGCCACAAAGGGGCCGACTGTCCCCGACGAAGACTTTTTTAGCCTCATTTTACGCTCTCAAGCTAAAAGGATGGATGAACAAAGAGTTCTGCTACAGAGAGATCCAAACAGGGACAGTGAGTTTGGACTAAAGGAACTTTTGCAAAATAATGCTCTGTTGGAATTTAAGCATTCAGGGAAATAACTAGCAAACCACAAGATGGTGTGGTATTTCCTACTAAAGAAAAGGAGGTTCCCTCGGGACACTGCAGGGAAACTCATCTTACACAGCACCGTAGTAGTCACCAAGTTTTCCGGGTGTAAATGTTGAAGTACTAAGGGACTGAAAGGTGCTTCTTCAACCTACCCGACCTTGAGACTCTGCTTGGGTGACTTAAGATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012149:ENSRNOT00000066178:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=NA C2=0.405
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=31.5),PF0218812=GoLoco=PU(47.8=15.1)
A:
NA
C2:
PF0218812=GoLoco=PD(43.5=13.3),PF0218812=GoLoco=WD(100=30.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCTTGCTAGCTCGCAGA
R:
GTCCAAACTCACTGTCCCTGT
Band lengths:
342-1636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]