BtaINT0068788 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021658 | GRASP
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:HGNC:18707]
Coordinates
chr5:28023716-28025410:-
Coord C1 exon
chr5:28025361-28025410
Coord A exon
chr5:28023771-28025360
Coord C2 exon
chr5:28023716-28023770
Length
1590 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GGCCCCTGTGTCTCCTGCAGGAA
3' ss Score
11.66
Exon sequences
Seq C1 exon
GGCTCAGGATTCCGCTGGAAGAACCTCAGCCAGAGTCCTGAACAGCAGCG
Seq A exon
GTGAGTCACCAGTACCCCCACCTCTGCCCTGGTCCAAAGGATGAAGTGCTGGGGAGGGGGCAGCACGACACAGCATCTCAGCCCACCCAGGGGGAGTCGTGCTCCCACCCTTTCAGCACGGTGCCCTCACCAGGAATGAGGGGCAGGTGGGGGTGTGGGCTGTGTGAAGGGGGTGGCAGAGGAAGGAGGGAGGGACTTTTGAGTCATCAGGTGCTCCTTAAACCACCCCCAGTCCCTGCCAGTCACCCCTCCCTGGAGAAATCTGGATCTGGGAAGAGGGAAGCAGGAGGAGTTTGGGGGGCTCCCCTGGGCCTTCCCAGCCCAACAAACCCTGAAGGCCCACACCATGGCAAGCTGCATCCAGCTGCTCGACTGTCTAGCCCTGCACCCAAAACCTCAGTGCTCTGCTAGTCCCATCGGTGGTGGCCTCTAAGGAAGGGCCTGGGGTGAGGGCAGAAGGACTAGCCCTACTCTGCCTGTGTCCCATCCTGATGTGAGCCTGGTTTCTAAAATGGATCAGCAGACTGTGGCCTGCTGGCCAGATTGGCCTTGAGCTGAGAGTTGTTTTGATATTTCTCAAGGGTTGTAAAAATAAAGACAAAGAACAATATAAGACAGAGGCTGTCAAATAATTCAGGTCTCGAAAAGAAAAGCTGAAATATTTACCGTCTGACCCTTTGCAGGAAAACTTTGCCAACCCTTTTAGAAAACCAGGGAGCACTGGAGTAGACACAGTCACCCTGCCCCCACCCCCACCCCGGCCCAAATACACACAGAGAGGAAAAGGCCTGCCTGCAATGCAGGGAGGAGCTCGCGCTGGGGTAGGGAGTTGCCGATCAGCTTTTGGGGGGCGGGTATGTGGGTCAGGCTGGGCACTGAGAGGCCTGGGTCTCCAGGGCCTTGCTGAGGCCGAGAGCCTTGAAGGAGACTTTGGAGGCTGCTTCAGCTCGGCTTCTGGCGGGGCGGGAAGGAAGGGGGTGGGAGTGGGCAGAGGAAACTCTGGGCTCCCCCAGCAGACGAAGATCTGGAGCAGCTCCAGACCATTGTGTCCAGTGGGCAGGCCTTCAGTGCGGGAAGGGGCGGCCTCGAGTCTCCCCTCCCCCCAGCCCTCACATCTGGTGGGCTGGCCTCACCGCAGCTGGGAGGGGCAGCTGGGGTCCGGGCTGAGCCTCGTGACCGGCCTCTGGGGGTGGGGCCAGCCCTCTCCCCAAGGCTCTGGAGCAGACAGCGCTCCAGGCTGGGGCCGAATTGGGGGCCTCAGCTAGTCAGTCAGTAGTATTCTGGGGCTCACTAGGAAGCTGGGAGTGTGGCCGAAAAACTCAACTAGTTCAACTGGCTCTGGGGGCTAGCCATTGCAGTGTGTCCCCCACTCGAGGGGATTGATTTTGTGTGGCTCGATGAAGCTGATTTCAGTATGGGGAAGGACATTCCAACAGCTGGGGATGAGTGTGGCTTGTCACTGGAGACAGTAAGCCCTGCCTTGATGTTCCAGAGCAGACTCTGGCATCAGGGGAGGGCCACACTATTGGCCTGCCAGGCTCCTCTTTAATCCTGACAGACTTGATGAGATGGCCCCTGTGTCTCCTGCAG
Seq C2 exon
GAAAGTGCTGACTTTGGAGAAGGAGGAGAACCAGACCTTTGGCTTTGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021658:ENSBTAT00000028862:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=NA C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0059519=PDZ=PU(18.4=84.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]