RnoINT0067289 @ rn6
Intron Retention
Gene
ENSRNOG00000007346 | Grasp
Description
general receptor for phosphoinositides 1 associated scaffold protein [Source:RGD Symbol;Acc:70554]
Coordinates
chr7:142872089-142874145:+
Coord C1 exon
chr7:142872089-142872138
Coord A exon
chr7:142872139-142874090
Coord C2 exon
chr7:142874091-142874145
Length
1952 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TGACCCTGTGTCTTCTGCAGGAA
3' ss Score
12.67
Exon sequences
Seq C1 exon
GGCTCAGGATTCCGTTGGAAGAATTTTACTCAGAGTCCTGAACAACAACG
Seq A exon
GTGAGTCACCCCCACCCAAAGCCCCTGCTGTGGTCCAGAAAAGTGAGGTGGGGGGTGTGTGGGGGTGGAGCATCTCAGCCCAACTCCCCTGGGAGGCATCTCCCATCCTTGAGCATGACTTCCCTGCTGGATTGAGGGGCAGGTGGGGGTGTGGGCTGTGTGAAGGGGCGGCAGAACAAGGGGGGGCACTTTTGAGTCATTAGGTGCTCCTTAACCACCCCCAATCAATGCCAGTTGTGTCTTCCTGGAAGAGCTGGATTAGTGAGAGGTGGGGGTAGGGAGGAGGAGACACCATGGGGGGTAACCTAACCTGTCCTCTGTGGCTTCCCTGAGCCCACCCTCACTCCCACTTCCCACCCCCCCCCACCTCCCACCCCCGGCAGGCCCAGACCGTGGGCATTCCGTGACCAGCCGTTTGAGTCTAACTGGTTTTATAGCTCAGACTTCCAGTCCTACGTTGGTGCCATCCCATAGCTGCCGTTTAGGACGGCTTTGAGATCTGGACGGTGGATGGGCACTCATCCTAGGACCTAGGGCTAAGGTTCCCTTATTGCCTATTTCTGAAGCTCAGGACCTTCCTCTGAAATAGTCCAGCAAATGGTGTCTTCCTGGCCAGGTTGTTCTGTTTGGCCCTTTAACTAAGAATCTGACATTATGCACACACACACACACACACACACACACACACACACACACACTACAAACTGGCTTTTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTTTGTGTTTTGCTTTATGAGACAGGGTCTCTCTACAGAACCCTGGCTGCCCTGGAATTCAAGATATCCTCCTGCCTCCGCTTCCCAGGTGCTGGGATTAAAAAAGGCATGCACCACCATGCCCAGCTCATTTTAATATTTTAAAGGGTTATAAAAACAAAGAATTGTACACGACAGAGACCACACAGGGCCCACAAAGCCCAAAATATTTACCATCTGGCTCTTTGCAGTAAAAGTTCACAGACCCTTCCAGGAACTCAGAAAGCACTGGGACAGACAGAGAATTTCCAGGTCTCCCCTGCTCCTGCCCCAGAACATACAGGGCTTCTGCAGAAGAGAAGTGTCTTGCCCAGCATTAGGTGGCCGGGGCTGTGACTTAGGATAGAAGCTAGGGGCTTGGTCTCTGGGGGCCTTTCTGAGGCTGCCAGACTCAAAGAGGCCTTAGGAGCCATTTCATTCTGCCTCTGACTGGTGGAAAGGAAGGGGAAGGGGTGGGCAGAGGAAACTCTGGGCTCCCCCCTCGGCCTAGGGTCTGGAGCGGCTCCAAACCATTGTGTCCTGCAGTCAGCCTTCAGTTCGGGAAGGGGTGGCCCCAGGCTCCCCTCCCCCAGCCCTCACATCTGGTGGGCTGGCCGCACCACAGCTGGGAGGGGCAGCTGTGGTCTGCGCCCAGCCTCGTGACTGCCCCCGGGGCTGGGGCTGTGTTTTCCTCAAAGCATCAGAGGCCTGGATGCTTCAGCCTGGGGGGCCAAATTGGGGGCCGTAGGTTAGTGAATATAAGGTCAGACTCACTAGGAGTCTGGGGTGCTGGTAGGCTCCCTCCTTTCCTGATTTGCCACCTCCCCTCTGCCCCCTAGCTGCCCCACTTACGAGGTTAGTTTATTCTGTGCAGCTCCCTGAGGCCAAATTCATTTGGGTTTGGGAAGGGCATTCCAAAAATCTGTGGAGAATGAGCTGTCACAGGAGACTGTGGGTCCTTCTGGGATGTTTAAGATCAGACTTCCACATCCCTGGGTGCTGAGCTGTGGGACTGTGTTTTTGTTTTGTGACCTTGTATTTTGAGACAAAGCCTCACTATGCAGCTCATTCTAAAATGCATCATCCTCCTGCCTCAGTCTCTCAAGGACTGGGATCACGGATGTGGGCCCACCAGAGCCAGCTCTCTCATACTTTTCTTAACTTTGGTGATCTTGACCCTGTGTCTTCTGCAG
Seq C2 exon
GAAGGTTCTGACTTTGGAGAAGGGAGACAACCAGACCTTTGGCTTCGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007346:ENSRNOT00000009979:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=NA C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0059519=PDZ=PU(18.4=84.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]