HsaINT0072111 @ hg19
Intron Retention
Gene
ENSG00000161835 | GRASP
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:18707]
Coordinates
chr12:52402974-52404719:+
Coord C1 exon
chr12:52402974-52403023
Coord A exon
chr12:52403024-52404664
Coord C2 exon
chr12:52404665-52404719
Length
1641 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GACCCCTGTGTCTCTTGCAGGAA
3' ss Score
12.49
Exon sequences
Seq C1 exon
GGCTCAGGATTCCGCTGGAAGAATCTCAGCCAGAGTCCTGAACAGCAGCG
Seq A exon
GTGAGTCACCAACACCCAGCCCCTGCCATGGTCCAAAGGGGTGAGGTGCTGGGTTGGGGGGTGCCAGGACAGCATCTCAGCCTAGCGAGGGTAGTCATTCTCCTAGCCTTTAAACATGGCTCCCCCGCTGGGAGTGAGGGCAGGTGGGGGTGAGGGCTGTGTGAAGGGGGTGGCAGAGAAAGGAGGTAGGGACTTTTGAGTCATTAGGTGCTCTTCAACACACCCCCAGTCCCTGCCAGTTACCCCTCCCTGGGGAGATCTGGATGAACGGATGTGGGAGTTGGGAGGGGGTGTAGGCAAAGTCTATGGGGAACGTCCTAACCCAGGCCTCCTGGGCTCCCCTGAGCCCTCCTAGCCTTGGCAAACCCCACGGGCCCAGACCTTAGCCAGGCTGTGTCCAGCTGCTTGGGGCTGGCTGCCCCTGCCTCCAGAATGTCAGTCCTCTTCTGGTCCCAGCCTGTGGCAGCCCTCTTAGGAGGGATCTGAGCGTGGGCAGAAGTAGGTGCTGACTCCAGGCCCTGGGACCCCACAGTTTCCCTTCTCTACTCATGTCCCATCCCTGATTTGGGCTTGACTTTCTCTAAAATGGATCAGCAAACTGACCTGCTAGCCAGATTGGCCTGTTTGGCCCTTGAGCTAATAATTTTTAAAGAGTTGTAAAAATAAAAACAAATAACAATATATGACAGAGATCATAAGGGGCCTGCAAAGAAAGCCTAAAGTATTTACCATTTGGCCCTTTGCAGAAAAAGTTTGCTGACCCTTCCAAAAAACCCTAGAACATTGGGGTAGACGCGGAACTCCCAGCCACCCTGCTCCCTGCCCCAATAGTACAGAGAGGGGAAAGGCCTGCTGTTCAGAGTGAGAGGGGCTCGAGCTGGAGTGGGGAGGTGCTGCTCAGCATTTGGGGGAATCTCTGGGTCAGGCTGGAAGCGGAGAAGCCTGGTCTCCAGGGCCTTTCCGAGGCTGAGCTACTTGAAGGGGCCTTTGGAGGCTGCTTTAACTGTGCCTCTGGCTGGGCGGGAAGGAAGGGGGTGGGAGTGGGCAGAGGAAACTCTGGGCTCCCCCAGCAGGCGAGGATCTGGAGCAGCTCCAGACCATTGTGTCCAGCGGGCAGGCCTTCAGTGCGGGAAGGGGCGGCCTCGAGGCTCCCCTCCCCCAGCCCCCACATCTGGTGGGCTGGCCCCAGCATAGCTGGGAGGAGCAGCTGTGGTCTTGCTGAGCCTCGTGACTGGCCTCTGGGGGTGGGGCCAGTCCTCTCTCCAAAGCTGTGGAACAGAGGAGGCTCCAGGCTGTGGCTGAATTTCGGGCCTTAGCTAGTCAGTAAGTGGTACTGTAGGGCTCACTGGAAAGCTGGGATGGGGCTAAAAAACTCAGCCGGCTCATCCTTCAGGGGACCGGCCCTTCTCTGTGCTTCCCTCCCACCACTAGAGGCTGGATTGGTTCTCTGTGGCTCCATGAGGCTGATTTCAATTGGGTATGGGAAAGACATTCCAATAATCTGTGATGAGACTGAGCTGTCACTGGAGACAGAGTCCTGCTGGAATGTTCTAGACCAGTTGCCAATATCCAGGGAGGCCCAAGCTATGGGACTTCTACACCTTTTAATCCTAATTGTCTTGACCCCTGTGTCTCTTGCAG
Seq C2 exon
GAAAGTGCTGACGTTGGAGAAGGAGGATAACCAGACCTTCGGCTTTGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161835-GRASP:NM_181711:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=NA C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0059519=PDZ=PU(18.4=84.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)