BtaINT0069662 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001132 | GTDC1
Description
Bos taurus glycosyltransferase-like domain containing 1 (GTDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076035]
Coordinates
chr2:52661007-52664915:+
Coord C1 exon
chr2:52661007-52661174
Coord A exon
chr2:52661175-52664741
Coord C2 exon
chr2:52664742-52664915
Length
3567 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
TTTATCCTTTCCCTTTGCAGCCT
3' ss Score
12.51
Exon sequences
Seq C1 exon
GATCCTCTTCGCAAGCTCAGTGCTTAACCTGACTGAACTGGCTGCCCTTCGACCTGACCTTGGGAAATTGAAAAAGATTCTGTACTTTCATGAGAACCAATTGGTATATCCTGTCAAGAAATGTCAGGAGAGGGATTTCCAATATGGATACAACCAAATTCTCTCCTG
Seq A exon
GTAGGTATAGATTGTATCACTGTATTTAGTCCTTTGCCATCTTTTTCCTTATCATTAACTTTTAAATCTAGAGACCTACGGTACACATATTTTTAAAATACCTTATATTAGGAGCAAATGTTTAAATATATCTTCCATGGTAAGAATTACTTGTACCTCTGCAATATATATATACAGATAAGAGAACAACTAATTTTTTTTATAAAACACATATGTGTAGCAACCGGATTATATGTTGAGCTAGTTATTTAACTGTATTTTCTACAACACTCAAAATAGAAGCAAAGAGCTGTCAGGGACCTCCTTCAGCCCCTTATTCCATCATCTGTTGTGTGAGATGTACTTTTAGAAAAGGCAGTTCTTCACCTCTTATTTACCAGCTACTTTCAGTGTATCCAGCCAAAATCAAAATAGAAATGTACAGAGGAGTAAACGAAAATTAAAGCGTAACAGAGAAAGAGGTTTTTGTCCTTTTATTCTTATTGTTTGTAAGAGAAAACTATGGAGAATGAATCTTTAGGTGATGTTTGGTTTTTTTTCTTCCCCTCATTGAGTCTTCTGAAATTGCCTAGCCTTAAAATACCATGACATTTTAAAGGTGATGGTCCTTCTGTTTTGTTACTTCAACAAAGTATATCTCTTAAAACTTAGTTAAAAAAAGAAGTTAATAACGACTCTGAAACAGCTTTGCTATTGGATCCCATCGACATAACACTCAAATGGAGTCAGTTTGGCAGTGACTGGGTACAGTTTACTCACCATTTTTAATAGTCGTTAGTCTTTGGGGTTGATGATGTTCTTAAACAGACACCCAGCTCTTTTGCTAGTATATTCCATAGTTTCGTTGACATAGAAAAACAGCTAGCTGGTAATACTTCTGTGTTTTGAGCATTTTGTAAATGTTTTCCTGCAATCATTTTTACAAGCTGCTTCAATTGTGAAGTAGCAATGCTATCAAAATAGAGAGGAGCTGCTTCCCGTCAACTGTCTCGTAAAAAAAAGCAACCGTTTTTAAATTTCAAAATAAAATTAAAATACTTTCTTTTATATTGAAACAGAGAGGGAAAATGTGTTTTAAAAACAAAAATGAAATCATTTTGTACTTTATCAATATGGAAAACATTTGTAATATTCTTTTGGTTTCTTGAATTAGCATCATTCTTTTCTCAGATAGTGTGTGTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAAATAGCAAAAAAAAAAAAAAAAAATTAACTCACTACCCTCATCTCTCTGTTCTAGAAAGATTGCTTTTGCTCAAAGGGAGTGAGACCATAAAATCTTATACATGATTTTTGAGCATTGCTCTTCTCAAGAGGATAAACTGGTAGATGAACTTGAAGAGAAAGAAATGGACTTGATCGTCACTGGGACTCTTAATGAGAAAACAGTGGTTTGCAGTCGTCCAGAGGAAAAATAAGAATGTCAGAAAGCAGTCCAGTTCAGATTCTCTTTGAAAAGTATGACTCCAGCTTCCTGAAATGTTTCTTTAGTTTTCTTGCTGACTTCTGCTTTTGTTGGCACTGTCAGATTTCTTTCTTAACTGTGTGGCAGTTAAGGACTTCAGAGATGACTGACAAAAGCACTCACCTTAAACAGAGGTTTCACTAACCCTCTGACTGGTGTACACTTGTCGTAACTATATATTATGACCTGTGAGTCGCTATTAAAATATGTGACATATAGTGAAAACAGACTAGCTTAAAACATCCTTCAACTTTTGGTGTATTATTATATTGGCTTCCTTATTGCTCAGTGTAGTGTCAGCACTTCTGTGACATTCTCTTGTGTTATCCATGTTGTAATCACTGCTAACCCCAAATTTGCACTAGGTTGCAACTAAAAAAACAGAAAATGCTTGTATGGGAAAGCAGTTTTCCGGGGTGGGAGTGGATAGGGATGGCAGGTCAACATTCCTTTTGTTGGTTTTTCATTCCACTATGTACTGATAGTAGGAACTTTGTCTCAGTAAACGCAAATTAAACTAAACTTAGGATTTGTTATGATAGTCCTGCTCTGTAAACTCTATCTATTCATTTGTGTTTTGCAGTCTTGTGGACTTATGTGTCTTCTTTTCAGTTTTCTTGATGTTCTTTTTAGAGTGAAATAAAACTGTTTCCTCTTTGATCTTATACACCTTATCAAAGCATTTGTATGCATCATGTTGAGATCCAGGGACACTGAGACATGGAATCATTGCTTAAAGCAATGAGTGCTATTTTAAAAAACAAAACAATGATTTATTAAAATGGTTTTTTGAGTCATAAAGGAAACATAGTACATATTCCTGTTTTATCCAGTTCACCCACGGTTATCATTTGTGTTCATTGGTTTCCCAAAAAATGTTGTACGCAAATTTGGAAACTACTGACATATTTATGATACATAAACTTTGTTTTTACATTCCCTTCTAACTATATATTTTAGATTATTTTTAATTTAAAAAAAGTGCTAAGGAGAGGATCACAGCATTTACATCAAAAGCAACAGCCAGTATTATATTTCTCTTGTTTAATTTTGAAGGTTCATGGTGTTATGGTCCTTTATAATATATTATGTAATCAGTAGGACCTAGTGGTATGGATTTCTGGATCCATTTTCACCAGTTTCTTCTATTGCTCTGACTCCCCCAAGTCTAATATAATAATAGAATAAGTTACTTGTAGAGTTCTCATATAATCCTTTCTGTGTATGTAGTCTCAGAACTTTCAAAAACCTAACAGTTTCTTAAAACAAAGGTTAAAATGAGAAATAGACTTTAACCACATGTTATGAAGGTATGCTCTAGTGTGAAATAATTTTATCTGGATTAGTCTCCTTAAAGGCAGTGAAAAGTATGCTAACTTTTTTGTTCTCCATACTGTGGTGTAAATCAAAGTACATCACTGACATAAAAACTCAACATGGGTAACTGGGCCACAGAGAGAAAGGTCCTCATGTTTTTGGTGACACTACAGAAAATTCCTGGCATTGCAGGAAAATATACTTAGGTTTGAAGCCTCATAAGTGAGAGTGTTAGTGGCTCAGTCATGTCCAATTCTTTGCAACCCCATGGTATGTAGCCTGCAAGGCTCCTCCGTCCGTGGAATTCTCAAGGCAAGAATACTGGAATGAGTAGCCGTTCTCTTCTCCAGGGATCTTCCTGGATTGATCCCAGGTCTCCTACATTGCAGACAGATTCTTTACTGTCCTCATAGAATCCCATTAAATCACTGAATTCCTTTCCTGCCTTTCCTCTCTGATGCCTGCCATCTAACTTCCCTTGATATAAGGCTAATGAAAGTAACTTATCTGTTAGGATCATTTTGATAAAAACCAAGAAGTGGAGAGTTCTTTGCAAACCCAAGATTCAGTAAAAACTGTAATTAATGAAGAAGTCTTTAAGCTTCTTCTTTATAAAAGAAGTTATAAAAAGAACTGAATGAATGTGGGCTCACCATATGCATTTATCCTTTCCCTTTGCAG
Seq C2 exon
CCTGGTGGCTGATGTGGTGGTATTCAACTCAGTTTTTAATATGGAGTCATTTCTCACTTCTATTGGAAAATTCATGAAGTTGATTCCTGATCACAGACCCAAGGATCTGGAAAGCATCATCAGACCCAAGTGCCAAGTTATTTACTTTCCCATCAGGTTTCCTGACGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001132:ENSBTAT00000001505:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120383=DUF3524=FE(33.5=100)
A:
NA
C2:
PF120383=DUF3524=PD(30.5=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]