MmuINT0074709 @ mm9
Intron Retention
Gene
ENSMUSG00000036890 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2444269]
Coordinates
chr2:44607567-44611955:-
Coord C1 exon
chr2:44611788-44611955
Coord A exon
chr2:44607741-44611787
Coord C2 exon
chr2:44607567-44607740
Length
4047 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
ATCGTCTTTTCTCTTTACAGTTT
3' ss Score
10.65
Exon sequences
Seq C1 exon
GACCCTCTTTGCAAGCTCAGTACTCAACCTGACTGAACTGGCTGCCCTTCGGCCTGATCTGGGAAAACTGAAAAAGATCTTATACTTCCATGAAAACCAGTTGGTGTATCCTGTCAAGAAATATCAGGAGAGAGATTTTCAATATGGATACAACCAAATTCTCTCGTG
Seq A exon
GTAGGTATTGATCATGGGAAACTTAATATTTGCCATCTTTTATCCCATTTTGTCAACACAGATTTTTCGGGGTGGGGTGCATATACACAGGCCAGGAGAAAGCTATGGCCTCTTCCTTTGATATTTATGGGGAGACTCCATAAGTCTGGGGCTTCTGCTTTAATTTGCTCTACTTGAAACCAGCAAGTCTCAGAGTTCCTTATCTGTTTGCCTTCCTAGGAGCCGAGGTTATAGGTAGGTACAGATGCCTGGCTTGCTCTGTGGCTGCTTGTGTCCTCACGATTTTGAAGCAGTTTCGTTTTACTGATAAGCTGTTTTTCCAGTCCCCATCTTTTCCTTTTCAGGTGGTTAATTTGTAAATATGGAGATCATTATAAATTTAGGAACCTATTAAAACACGTATAGGTGCTTAAAGGTTTTTTTTTTTTTTTATAATATGTGTGTTTATGGAAGATTTACAATATTACTGCTGCTCTTTTATTAAAAATTTTAAACAATATTTTTATTGATTATTTGAGAATTTCCCACAATGCACCATGATTACCTTTATACCTATTCCTCCAAGCTGTGCCCCGGACCCTGTGGCCTGTCCCCCAAAAAAGAGCTGGAAAAAAAATAACAAGTTCAGTTTGTGTTGTCTAAATAGTCACTGCAACAGGGACAAGCTCCTGGTGGTGACCCTTACAGAAGGCGAGCCGCCCTCTGCCCGCTCCTGCTAGTAGTGATCTATTGTGGAGAGCTACATTTCATCCGCCTTATCACATGTTTTCCCCAACATGATATTTTTTATTGATTCTTTGGAGATTTCACATCTTATAGCCCTGTCACATTTACTTCCCAGTTCTTTTCTGTCCACTCCCTCTGCCCTTTTGACCTTCCCCACTGCCCCCCCTCCATTTTATTTTGTGATATTTGTATACTCCCTGGATCATGGTCTAACTCTCAGTGCCCTACCCCTTGAATAGAGCTGAGGGCCTCCCCTCTCACACTTCTGCTGGAAGCCATTTATTATGGAGAGTGATATTTTACTGCATCCTATCATAGTTTGTAAGAGTTTACTTTATGATGACTTCCTGTTTAGGCTGTTAGTAGTAGCTTCATTAGTAGCTGCTAGCTGCAGATATTCATAATGTGTTTGAACAGTCCTTGCTAGTCTGTTTCTTAGTTTAGTTGACATAGAAAAACAGCTATATGGTACTAATTTTGTTTTGAGCAGTTTGTAAATGTTTTCCTACAGTCATTTTTACAAGCTGCTTCAATTGTGAGGGAGCAGGGCTATCAAAAGAGTAGAAGTGCTGCCGTGAAATGTCTCATAAAAAGCACCCATCTTAAAATTCATAATAAAATTAAAATACTTCATTTTATCTTGAAGTGGCAATCGGAAAATATGTTTTACAAATGAAAATGAGAGGCTGAGAAATGGCTCAGTGATTGTGAGCACTGATGGCTGTTCCATAGGACCCAGGTTCAATTCCCATCATTCAATTCCCATCACATGGCATCTCACACCTATCTGTGACTCCAGTTCCAGGGCTCTGACAACCTTACACAGACATACATGTAGACAAAACACGGATGAACATAAAAAAAATAATCTATTTTTAAAAATTAAAATGAAATTGCCTTGTAGTTTATCAATATGTAAAACATTGGTCTTGTTTTTGTGGTTATTGAATTAATACCATATTTTCTTTCAGATACTATGTTTTTATTATCCTGAGAAACCATGAGGGAAGAATTAAGTATTTTTTCCTTTATGGGTGGCCTTAAACTTAATGGAAGTTACACCCATTTGTATCAGAAAAGAAATATGTGGAAAAAGTATATTTCTGTAGTCCAATGTGAATCTTTACCAGCATAGATTAGATACTTTAGAATAATAGTAGTTGGCTTGGATGTTTGTTGTGGGCAAACATTAAATTAAAAAAATTAGACTCTGCCTCTTTCTCCTTTACAGATATTCTTTCCTCATAAGGATAGAGACCTAAACCTTGCGTGTGATTTTTCAGCATTTCTCCTTTCAAGAATATAAGTTGATAGGCAAGTTTGCAGAGAAATAGCTGCACCACATCATCATTTGGCTTTGTAATAGGAAGAAAAGTATGTCTCAGCTGTCCAGAGACGAAATAAGAATGTTAGAGAGCAGTCCAACTCCAGGATTTTTGAGAAATATGGTTTCTTCTTCCAATGTTTCTTCCATGTTCCTGCTGAGTCTGTGTTCCTTGGCACTGACAGAGTTCTTTCTGGACCGTGTGACAGTTAAGGATTTTAAAGATTACTGACATAAGCTGTCACCTTAAACAGAAGTTTCACTAACTCTGACTTATGAACACATGCTATAACTGTATATTGTGACCCGTTGCTCACAACTGCAATGCATGACATATGGTACAAACAGACTAGATATAATGTTCTTCAGCTTTTAGTATATTATTGTATTTGCTTCCTTTATCACGTAGTTTTGTGTCAGCACTTCATTCCTTTGTAGTATCTATCTTGCTGTTGCCTGTGTTCCCCAAATTTTCTCAAGGTAGGGGCTCAAAAAAAAAAGTCCAGGCAAAGTCAATTTTTTGTATAGGAATGGCAAATCAATGGGTCTTCTGATAGTTTTTGTTTTGTTGTCTACTAATGATAGCAAACCCTCCTTCCTTGGTAATTATGGTATAAATTAAGCTAAGGATTAACATGGCATTCATGTTTTATCTATAAGCTCTGCATGTTATGATGAATTTTTATAATCTAGTAGACATGCATTCTTTCAGTCTTATTGTTATATTTATTTTAGGATGAAATAAAGGTATCTGTTTTGTCATGTCTCCCTTCTTATTGACTTCAGTTGCTGTTGATAGATAAAATGATCAAAAGCAACCTAGGATGGAAACAGTTTATCTCCTCTTATAAGTCATAGTACATCATTCAATTCAGTGAATTCAGAGAAAGACCTCCAACTTGAAGTAGAAACTAAGGAACACTGGCTTGTTCACAGGCTCCCATTTACACAGCCCAGTCCCACCTACCTAGGGATGGCACCACCCATAGTGGGCTTCACTCTCCCAAGATCAATTAGTAATCAAGAACATGGCACAGAAACAATGCACATGGCCTAGACTGATGAAGGCAGTTCTTCAATTCACGTTCCCCTTTTTTAGGTGTGTCAAGTTGACATGTAGGTGTACCAAGATAAGGCATCATAGACATTTTTAAGAACCAAATCTTATTAAATTAATTTTTTCATGTTATACTTTGAGGTTTATTTAGCCTACCCATTGCTACCGTTGGTGTTCAGACAGTATGTAGTAGACATTAAGAAAATTACTTTTATTTTTATATTATCTAAAACCTGCATTAACAATATATTTCATATTTAAAAAAATATTGACAAGAGACAGATTGTCTGAATCATCAATACTGCATTTCTTTTGTTTAGTTCTAAAGAGCAACAGTTGTGGTCGTTTATACTTTTTAAATAATAAATCCTAATAGTGTGGGTATCTAGATCTATTGCACTAATTATTTTTCTACATTCATGACTGTCCTAAACAGCATAAAAGTGAAATTAATTACTATCACCCCATGTAGTACTAGAACTCAAAACCATAAATTTCTTAAGCAAAAGCTAAAACATGAAATGGACTTTAAATCGTATTCAGGGTATCATGATTCCATAGGAAAAGCCTCAATGACCTTCCTCAGAGCCAGTGAGGAAGTCATAAACCTTCTATCCTCTGTAGTACATAGAGACATTGTTGGGCTAGCTGTGCTTGGTACGGATAATGTAGGAAGTTTATGGCATTTGGGGAGATAGACATTACTTTCATGTGTTATGTGATTTCATTCAATTTCCCTCTGGCCTGTCTTACTTAAGCCATTAACCCAACCTTTTATGATAGGATACTATGAACTAATACTTCTGTTAGTTGCGATATATATATATGTTAGATGCTCTTTGCAAACCTCAAGTATAGGAGAAAGTCTAGGTAGTATGCAGAGGTCTTGGGATTATCAAGTAATTCACAATGAATTTGCAATCGTCTTTTCTCTTTACAG
Seq C2 exon
TTTGGTGGCTGATGTTGTGGTATTCAATTCCAGTTTTAATATGGAATCATTTCTTACTTCTATTGGAAAATTCCTGAAGCTGATTCCTGATCACAGGCCTAAGGATCTGGAAAGCATTATCAGACCCAAGTGTCAAGTTATTTATTTTCCCATCAGATTTCCTGATGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036890-Gtdc1:NM_172662:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PD(47.8=96.5)
A:
NA
C2:
PF120383=DUF3524=PD(30.5=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: