GgaINT0049502 @ galGal4
Intron Retention
Gene
ENSGALG00000012424 | GTDC1
Description
glycosyltransferase-like domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012939]
Coordinates
chr7:32697951-32701157:-
Coord C1 exon
chr7:32700990-32701157
Coord A exon
chr7:32698125-32700989
Coord C2 exon
chr7:32697951-32698124
Length
2865 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
ACCTTCACTGCTTTTTACAGTTT
3' ss Score
7.94
Exon sequences
Seq C1 exon
GATCCTCTTTGCAAGCTCCGTGCTTAACCTGGCTGAACTCGCTGCCCTGCGCCCTGACCTGGGCAAATTGAAAAAGGTCCTCTACTTCCATGAGAACCAATTGGCGTATCCTGTCCAGAAGTGCAAGGAAAGGGATTTTCAGTATGGATACAACCAGGTTCTTTCATG
Seq A exon
GTATGTGTTTCTCACACCTCTCTGTGTTGTTTAATGTGTCCTTCTACGTACCAATGCTCAGCATCGCCAGCCCTGAGAAATCCCCCTCCACTGAAGTGAAGAGACTGTAGCAAGCAGAGGTACAAACAGCGTCCCAAAGAGGAGCTAAGAAAAGGGTTCTGGCTAAAACCACATCCTCTATCCACTCATCTCAGTGTATAAAAGAGCAGTGATACCAGCACAAGTGATGGGTAGCAGCTCTGCCCATGGCGTGGACATGGAACGGGGTCATCTTTGAGGTCCCTTTCAACCCAAGCTGTCCTGTGATTCTGTTGAGCTACTGTGGCATACCTGGTAGTTGTGTGGGTTTTGCCCCATCTTGGCTGTCGTGAGTGAGATGCTTTGTTTCATGTCTGCTTAGCAAAGCCCAGCTAAGCACCTCCTGCTTGGCCGTAGCTTTTACTGCATCCAACTGAAATTATAGAGAGGGTTTTAGGGAAATAAACAGAAATTAAAACGTAATGCTGCACTTTTCTTGTGAAGAGAGGGCAGTAAACATACCAGATAAATCCTTATATTTTTTTCATCTGGTATTCAGAAATTGTGCAGTGCTAAAATACCCAGACATTTTAAAGGCTGCGGTCCTTTATTGTTGCTAAAAACAAATGTATTTCTTGAATCCAAGTTAATGAAAGAAGTTAATAACCACCACACTGAAGAGCTTTGTGGTTAGACTCTGTACAAACCTAAGTGAAACGGCAAAACTGAGTTGTTCTGAGCACTGGAATAAATTGATTTGCGTGATCTTTTCTTTCCTAACTGCTATTAGGAGAATTATGAGGACCAGAGATTGAGCATTTCAAGATATAAGTTAAGCTTTTGTATCATTATAACGTAGGCCAGTTGATAGTCAAATTTCTCAGGGTACACTCTGGCCATCCTGCAGCTGCTGCATTTGCACATGTTTCACTGCTTGAACAGTAGAGTAGGAGAGGACAGTGAGCAGTGCGATGAAAGCTTTAGCAGCCATTTTTGGATTTTACACCATGAAGATGTCTTTGTGGCACTGAGGTAAGGAATATATTTTGTGTATGTTTTGCTTTCTTACGGCAGTTATTTTTTCTATTGTAAGCTGACAGACATTATCTTCAAAGCATGCATTTTTAAAATAATAACATTCTTTTGCCTCACCTCCCCCTAAAAGTCTTCTATAGATGCTCCATTCCATTTCCTTCAGCCTCCAGTAGCACCTCTGTATAATTATGTAATTTCCATCTTTCATTTTTGTTGCTGTATAAACCCCATTTTTAAGAGCAAATGGAAGCCATCTTCTCAGTGCAGTGTGTAACTACCTAGCGGTCATCTGCAAGGAAATGCCATCTTCCATCTTCCAAATCTGTTGGAAATACCAGAAACATGAAAATACATATTTCCTGATCTATCTTTATATCGGTATATTTCCAACTCTATCTTTCCATGCTGTTTTGCATAGATGTTTTGGAGAAAATTGAAATTGGAGCACTTGGAATCTTCTTGAGTCGTTAAGGGAGATTTTATTTTCTCCTTAATGATTCAGAAGCGTTGCAATGATACTGGTAATAAAGTCACACGTTCCAATGGTGGAATTCCTTTCCTTGTAGCTGCTTGGGCTGCAAGGATGACAAGGGTGTTCAGGTTTGCAGTGCTATGCACAGCCTCCAGGATAAAGCCGAACAGTTGAGGCTCAATATATGAGACGAAGAGAGGTGGAAATGTCTGGAGCCTTTGCTAGGTGCCAACCTTACCTCCATCACTTGCCAGGGCAGCCAAGGCTGTGTCAGAGCTTCCCATGCACAATTCTAGATACTTCAGGGCCTTGAGGGCCTGGGTGGCTTTTTAATGTCTCCTGAGCAACTCTCAGTTGAGGAATATTTCCTAAATTACTGTTTCAACTGCTTCTGAAATCTCTTGGTCTGATTGATTTTAGAACATGGCACTAAAGAGCAATACAACGTATTAGCATACTGAACCTTTTTTTCTTTTTATTTGATACTGTGTACTATGTGGTATCTACTTTTTCTTTAGTGCACGCATAGGTTAAAAAGCCAAAAATGTTCATCTTTGTTATCGCAGTCCCTGGCCAACTTGGCCAGTCAAAGGTAGGTTAACCAAAGGTAAGTTGTTATAGAATGGAATCATAGAATGGCTTGGGTTGAAAAGGACCACAATGACCATCCAGTTTCAACCCCCTGCTATGTGTAGGGTCGCCAACCAGCAGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTGCAGGGATGGGGCATCCACAGCCTCCTTGAGCAGCCTGTTCCAGTGTGTCACCACCCTCTGAGTGGAAAACTTCCTCCTAAAATCTAACCTGAACCTCCCCTGTCTTAGGTGAAAACCATTCCCCCTTGTCCTATCACTATCCACCCATGTAAACAGTTGTTGTCCTACAGTACAAAGGGTTTTCTGTGAGGAGTCTTCTTCCAGGTTCTACCAAAGATGTATTACAGTGCCCCTAATCTGTTTGTAGGGCTCTGGAAAAACAAAGACAGTAATATTAATCTCACCCATGTTATGAATGGAAAGTGAACTGTGGATAGAATGGGATCTGCTCCTTTAGGTTGATAATAATATATTGTTATTTGCTTTTAAAAAGTTCAAAAATAATTCAAAGTATAAAAACGCAGGAATTGGAATGTTTCTGCTTAAGGTATGTATGCTACTTCTGGTTCACCTGAAAAGGCTAAGATTAATTGGCATTCCCATTATACATTTTGTATATGAGAATGTGTATCCTGTTTTCATTGCATTTGAAATAGCTCCTTTTGCAACAGCAGTGTGTCCATTAACCTTCACTGCTTTTTACAG
Seq C2 exon
TTTGGTTGCTGATACTGTGGTGTTCAACTCTGCTTTTAATATGGAATCGTTTCTTACGTCCATTGGAAAATTTATGAAGCTGATTCCTGACCACAGACCTAAGGATTTGGAAAAAATAATCAGACCGAAGTGCCAAGTTCTCTATTTTCCAGTCAGGTTTCCTGATGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424:ENSGALT00000020306:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120383=DUF3524=FE(33.3=100)
A:
NA
C2:
PF120383=DUF3524=PD(30.4=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]