BtaINT0069665 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001132 | GTDC1
Description
Bos taurus glycosyltransferase-like domain containing 1 (GTDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076035]
Coordinates
chr2:52891004-52891868:+
Coord C1 exon
chr2:52891004-52891074
Coord A exon
chr2:52891075-52891776
Coord C2 exon
chr2:52891777-52891868
Length
702 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
TGTATCTGTTTTTCCTGCAGCTG
3' ss Score
11.98
Exon sequences
Seq C1 exon
GTTGGAAGCTGTGTATTGTGGGTGTTACCCACTTTGTCCCAAAGATTTGGTTTATCCTGAAATATTTCCAG
Seq A exon
GTAGCTGCTTTAATGTACTTTTGTCTTTGTTGAAATTTACTACATGATTCATGCTAAATTAGAAAGTTTGAAAATAAACTTAGGCAGGAGCAATTGTTTATTTGGCAAGTCAACATGTTAGTGTTAAGGAAAATTTTATGTGTTTTAATACATTAGAGTAAGCTTATATTTACCATCTGTTCTTTTAAGATAACAAAAAAGCAAGTTTTCAAATAGCATTCTTCATTGTTAGCATACACATCCCATAATGATGGATTTTTATAAGCAGGTCAGCGTTGCTGCAATTGCTTACAGATTTTTTTTAATGATATACACAGAGAAAAATTGAGGACTGAAAGTCACACCAAATTATTTCAACAATTGACTAGTTAATAATATGCAACTGTTGTACAGAGTACGTATGGCTATCGTACTTGTTCTTTGAAAAAATTCTCATCACTAAATATATCACATATGCATTGTGTTACATTAGAATAATGTATTTTAATCACCCAAAGGAGATGTCTAAACAGCACAACTACACAGTCTTATTTAGCATTAAACATCCTTGTGAGCTGAGGTAACCTTATAAAATCATGCTTAAATAATGTAAAACACGAGGCGGCACAGAGCAATATGCATTTTTAATTAGTAAAGTGACTAATATCGGGTGTGTGCTTTGAGGTTTTTGTTTCATTAAAAATGTATCTGTTTTTCCTGCAG
Seq C2 exon
CTGAGTATCTGTATTCTACACCTGAACAGCTTTCAAAAAGGCTCCAGAATTTCTGCAAGAGACCAGATATTACAAGAAAACATCTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001132:ENSBTAT00000001505:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]