GgaINT0049506 @ galGal3
Intron Retention
Gene
ENSGALG00000012424 | GTDC1
Description
NA
Coordinates
chr7:34745716-34746594:-
Coord C1 exon
chr7:34746524-34746594
Coord A exon
chr7:34745808-34746523
Coord C2 exon
chr7:34745716-34745807
Length
716 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
TGTATCTGTTTTTCCTGCAGCTG
3' ss Score
11.98
Exon sequences
Seq C1 exon
GGTGGAAGCGGTGCATTGTGGCTGTTACCCGTTGTGTCCCAAGGCCTTGGTGTACCCGGAGATCTTCCCAG
Seq A exon
GTAGCTGCTTTGCTGCACACACTTTTGGTTGAAAAGCAATACGTGTGACGCGTGCTAAAATGTAAAGTTTGAGCATAAACTCGAGCAAAAGCAATTGTTTATTTGGCAAGCCGACATGTTAGTGTTAAGGAGAATTTTATGTGTTTTAATACATTAGAAGAAGTTTATATTTGCCATCTGTTCTTTTAAGATAACACAAAAGCAAGTTTTGAAATAGCATTCTTCATTGTTAGCATACACAACCCATAATGATAGATTTTTGTTAGAAGGTCAGCGACGCTGCAATGGTTTGCAGATTTTTTTTTGAGATAGGGAAAAAAAGAAGTAGAAAAAAAAAAAATGGAGGCCTGAAAATCACACCAAATTATTTAAACAATTTAATACTTAATAGTATGCAACTGCGATACGGGATACACACTAATGTAGTACCAGTTCTTTGAAAAATCTCATCACTAAATGTATCACATATGCATTGTGTTACATTAGAATAATGTATTTTAATCACCCAAAGGAGATGTCTAAACAGCACAACTACACAGTCTTATTTAGCATTAAACATCCTTGTGAGCTGAGGTAACCTTATAAAATCATGCTTAAATAATGTAAAACACGAGGCGGCACAGAGCAATATGCATTTTTAATTAGTAAAGTGACTAATATCGAGTGTGTGCTTTGAGGTTTTTGTTTCATTAAAAATGTATCTGTTTTTCCTGCAG
Seq C2 exon
CTGAATATCTGTATTCTACACCTGAACAGCTTTTTAAAAGGCTTCAGAATTTCTGCAAGAGACCAGATATTGTAAGGAAACATCTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424:ENSGALT00000020306:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=FE(17.3=100)
A:
NA
C2:
PF0053415=Glycos_transf_1=PD(15.8=71.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]