RnoINT0068246 @ rn6
Intron Retention
Gene
ENSRNOG00000031038 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:RGD Symbol;Acc:1563393]
Coordinates
chr3:29416403-29417262:-
Coord C1 exon
chr3:29417192-29417262
Coord A exon
chr3:29416495-29417191
Coord C2 exon
chr3:29416403-29416494
Length
697 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
TGTATCTGTTTTTCCTGCAGCTG
3' ss Score
11.98
Exon sequences
Seq C1 exon
GTTGGAAGCTGTGTACTGTGGCTGTTACCCACTCTGTCCCAAAGACTTGGTTTATCCTGAAATCTTTCCAG
Seq A exon
GTAGCCGCTTTCATGTGCTTTTTCTTTGTTGTGATTTAATACAGGATTCATGCTAAACTAAGAGTTTGAAAATAAACTTAAGTAGGAGCAGTTGTTTATTCGGCAAGTCAACATGTTAGTGTTAAGGAGAGTTTATGTGTTTTAATACATTAGAGTAAGCTTATATTTACCATCTGTTCTTTTAAGATAACAAAAAAAGCAAGTTTTCAAATAGCATTCTTTATTGTTAGCATACACATCTCATAATGACGGATTTTTATAAGCAGGTCAGTACTGCTGCAATTGCTAACAGATTTTTTTTTAATGATATACACAGAGAAAATTCAAGGATTGGAAGTCATACCAAATTCTTTAAACAATTGACTAGTTAATAATATGCAACTGTTGTACAGGGTACATACAGCTACAGTACTGGGTCTTTGAAAAAATCTCATCACTAAATATATCACATATGCATTGTGCTGCATTAGAATAATGTATTTTAATCACCCAGAGGAGATGTCTAAACAGCACAACTACACAGTCTTATTTAGCATTAAACATCCTTGTGAGCTGTAACCTTATAAAATCATGCTTAAATAATGTAAAACATGAGGCGGCACAGAGCAATATGCATTTTTAATTAGTAAAGTGACTAATATCGAGTGTGTGCTTTGAGGTTTTTGTTTCATTAAAAATGTATCTGTTTTTCCTGCAG
Seq C2 exon
CTGAGTATCTGTATTCCACACCTGAACAGCTTTCAAAAAGGCTCAAGAGTTTCTGTGAGAGACCAGACATTATAAGAAAACATCTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031038:ENSRNOT00000059679:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=FE(15.7=100)
A:
NA
C2:
PF0053415=Glycos_transf_1=PD(18.7=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]