BtaINT0070002 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018085 | GTSF1
Description
Bos taurus gametocyte specific factor 1 (GTSF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034273]
Coordinates
chr5:25742561-25744924:+
Coord C1 exon
chr5:25742561-25742593
Coord A exon
chr5:25742594-25744827
Coord C2 exon
chr5:25744828-25744924
Length
2234 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTTTTCTTGTTTCCTTACAGATG
3' ss Score
13.59
Exon sequences
Seq C1 exon
ATGGAAATGCACAGTAACTGAATATTTCATCAA
Seq A exon
GTAAGTGTTTCAGTTTTATTTCATAATTTTTTCAGATGGTAGCAAGATTTAACTGGACATAAAGCAATCTGGGTCCAATTTTCTTTTAGATTATGGTACCAAATTAAAGCTCTGTGTGTGCCTTTCGTTTTTTAAGTATATAGCCTCTGTTATGGCTTTACATGCTAATGAATAAACATTTACTAGTTAAATTAGAATTCTGTTACATGCCAAGTTGCTCTCCCTAACGTTAGTGCACATTGCCTTTTTCTTTTTTTTTTAATCAAAGTTGCATTCTACATCTATCATGCCTTTTTAATGGGCTGAGATTAATCAGACAGCTGTGCTTCACTGCTTTGCAATTCTTTCCCTGTGCAGTACAATTTAATACTCATCAAAAAATTCATACTTTTTAACTAGCATTTTAAAGTTTTGGGTCTCCAAAAGTCTCTAGATCTTATTGCACTGTAGATCTTATCTGAATATTTGATTTAGCAGAACCTTACAAAATCTATATAAAGAGACCAAAATCTTTTAGTTTTCGTAGATGAAGCCCATCTTTGAGATACCCTATGTACCCACAGCAGAGCCAGGTTTGATGCTTCAAACGGCTGCCTTGGCTGAGGTTGACCAGCCACATGGCTTCTGGCAAAAGAGGAATATTGTTGGGCCGGGAATGGGATGATAATCCCCACTGTCATGAGATGGTAGGCCTTCAGTGAATATTTATTGAATGAATGAGTAATTGGCTTGTTGCCTTGTAGTCCATTCACTTTTTCTGAACAGTGAAGCAGATGGATCTTCTGCGAGCTAGGGTTTGTTTTGTACCAAAACTGATGTTTCTTCTGTTGAGAAACAAAAGATATTCTAAAAGCAAACACCCCTTAGCTGAGAACAATAATATTTATCAGTTGCTTCTAGGGACGGGCCATTTTTCTTGGTAGGTTCTGACATCAAATTATTAAATATATCTGGAAGCCAGAAAATTGGATTTGGTCCCAGAAGGCAAAGAGACGCAACTGCAGTGGAGTGCATCAGAAAAGCACACACAGACCTGGGTAAATGAAGAACTCTGAATCCTTCTCTGGCACACTGCTCAAAGTGTTTGGTGTTCATCCAGTATGGATAGCTACCTATCCAGTGGCTACTCTATGGTGAAAGCCTAGGAGAAACTTCTTGTCACTTAGGACTAAACACTTTTCTGCTTTGGAAAAGTGATAAACTCATTACACACTGATAATTTTTCTGTACGTGTTACCACAGAGGAATAAGGGGGAAAATTTAGGTAAGAATCCTTAAATAGCCACAGATCTTCTTATCCTCTTAGTTAAAAATAAAGCACCATTTTTTGAACGCCTGTTGTTGCAGAACTCTCTTCTTTGGGTAGATAGACACACACACACACAACACACACACACACACACACCACACACACACCACACACACACCACACACACACCACACACACACACACACACACACACACACACACGGAAGGCATGACTTATTCCCTTAAGGAACTTAAAGAGTAAGCAGAAAATTTTTTTTATTGCACATACATGAAAAGGGTTTGTTCACCTTGCACTTAAATGCTTTATCCCATTTATGTTTTCATCAACAATATTTTACCAGATAAGTGCCTCAGAAGCAGGTATACCGTGTTCATTTTTGTTCCCCTATTATGCATTGTGAGCTTCCCTGATAGCTCAGCTGGTCCTGGGTCGGGAAGATCCCCTGGAGAAGGGCACGGCTACCCACTCCAATATTCTGGCCTGGAGAATTCCATGGACTACATAGTCCATGGGTTTGCAAAGAGTCAGGCAGAACTGAGTGACTTTACTTTCAATGTGCATCGTAATAGCTCAAAAAATATTATTAAATTAATGAGTAGATAGGGTATATGAAAAGAGAAAAAAATAAGTTAATTGGAATTAGTCCAGAATTGTCTGGAGAAGTCAGTTGCCTGGATGGTAAATTCTGATTTTCTCTTCACCCATGGTAACTATCAAGGACTGTATATTGATCTCTGTATAGAATGTTTTTAAATCAATTAACAAGTTTCTGTGTGATTAGTAATACTAAAGAGCTAAGGGTCAGAAGGTACCTGGTGTTCTGCCCTTAACAACAACAGATTCTTCCAGCAGACCAAGAGACTGTAATTGGGCTATAGTTGTGTGGCCTGTTGTCAGATGTGGTTGGTGCTTTTGTCATTGAAAGGAACTAAGAACTCTTATTTTTTTCTTGTTTCCTTACAG
Seq C2 exon
ATGCCAGACCCTGGAAGACTTTTCTTCCCGCTACAGTGTGTTCTTCATTTTTTTTCTCCTAATCTAATTATAGAAAGATAAACTGTCTGTGACTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018085:ENSBTAT00000047442:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]