HsaINT0073584 @ hg38
Intron Retention
Gene
ENSG00000170627 | GTSF1
Description
gametocyte specific factor 1 [Source:HGNC Symbol;Acc:HGNC:26565]
Coordinates
chr12:54455957-54459125:-
Coord C1 exon
chr12:54459089-54459125
Coord A exon
chr12:54456154-54459088
Coord C2 exon
chr12:54455957-54456153
Length
2935 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTTTCTCCATTTACTTGCAGATG
3' ss Score
11.01
Exon sequences
Seq C1 exon
ATGGAAATGCACAGTAACTGAATACCTATCTCATCAA
Seq A exon
GTAAGTGTTTCAGTTTTATTTCACTGTCTCTTCAGATGGTAGCAAGATTTAACTGGACATAAAGCAATTTGGGTCCAATTTTCTTTCAGATTATGGTACCAAATTAAAGCTTTGTGTGTGCATGTGTTTTTTAAGTATATAGCCTCTGTTATGGCTTTACACTCTAATGAATAGGCATTTACTGGTTAAATTAGAATTCTGTTAACATGCCAATTTGTTTTCTCTAACATTAGTACACATTGCCTTTTTTTTTTTTATCAAAGTTGCATTCTAGATCTATCATGCCTCTTTTAATGGACTGAGATTAATCATTGAGCTGTGCTTCACTGCTCTGCAATTCATTCCCTGTGCAGTACAGTTTAATACTCATCAAAAAATTCATACTTTTTTTAATGAGCACTTAAAAGTTTTGGGTTTCTGGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACGGGGAGACCAAGGCGGGCAGACCATTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATTCAAAAATTAGCCGGGCGTGGTGGTGCACGCCTGTAATCCCAGCAACTCGGGAGGCTGAGGCAGGAGAATCGCCTGAACTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGTCTGGGCCACAGAGTAAGATTATGTCTCAAAAATAAAATAAAATTTAAAAAATAAAAGCTTTGGGTTTCTAAGAGTTTTACACTGTCGATCTTATCTGAGTATTTGATTTAGCAGAACCTCACAAAATCTATGTGAAGAGACCAAAATCTCTCTCACTTTTCACAGATGAAGCCTTTCCTTTAGGTTACCCTATGTGCCTGTGGCAGAGCCAAGTTTGATCCTTCAAATGTCGTCTTGGCTGAGGTTGCCCAGACACATTGCTTCTGGCAAAGGGAATGTTATAAAGGCTGAGAATGGGATTATATCCCAACTGTTTTGCAGTTAGTAGGCCCTCAGTGAATATTCATTGAATTAATGAATAATTGGCCTCTTGCATTCCAGTCTGTTCACTCTCTCTGAACAGTGAAACAGATAAATCTGTGAGTTAGTTTCATTTTGTAGTAAAACTGATGTTTCTTCTGGTAAGAAGCAGAAAAGAGATGCTAAAAGTTAACATCCCTTAGCTATAGACAATAATACTTATCAGTTGCTTCTAGGTACCAGCCATTTTTCCTAGTAGATTCTGACGTCAAATTGTTAAATACATTTGAAAGCCAGAAAATGGGATTTGGTCCCAGAAGGAAAAGAGATACACCAGCACTGGGGTACATCAGGAAAGCATACATTGAGTATGGTGGTATGCACCTATCATCCCAGCTACTTGAGAGGCTGAGACAGGAGGATCACTTGAGCCCAGGAGATCAAGGATAAAGTGTACCATGACTGTGCCTGTGAATAGCCACTGTACTCTAGCCTTAGCAACATAGTGAGACCTCGTGTCTTAAACAAAAGCAGGGAGGGCTGGGCACAGTGGCTCACACCTGTAATCCCAACACTTTGGGAGACCAAGACAGGGGGATTGCTTGAGCCCAGGAGTTTAAGACCAGCCTAGGCAACATAGTGAGACCTGTCTCTAAAAAAAGGGGTTGGAAGAGAAGCATACATTGAACAGACCTGGATAAATGGTGAATTTTGAATTCCTCTCTGATATGCTATACAAGGTGTCTGGCGATCAAACAATATGAATAGCTGTCTAGTAAAAATGGCTACTCTAAGATGAAAATCTAGGAGAAATTTCTGTGTCTATAACTTAAGACCAGACCCTTCTCTCCTTTGGGACTTAACTCTTTATGGTTAAACTCCTTACACACTAAAAATTTATTTTTCTGTGTAACTCCTGAGGGATCAGAAAAATAATTAGATTAGATAAGAATCCTTAAGCAGCCACAGACATTATCCTCTTAATAAAAATGAAGTTTTGGGTTTTTGTTTGTTTGTTTGTTTTTTGTTTTTGAGATGGAGTCTGGCTCCTGTCACACAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTACCTCAGCCTCCCAAATAGCTGGGATTACAGGTGTGTGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGTGTTTCACCATGTTGGCCAGGCCAGTCTCGAACTCCTGACCTCAGGTGTTCCACCCGCCTTGGCCTCCAAATAGCTAGGATTACAGGCAGGAGCCACCACACCCGGCCATTAAGTATTATTTTCAATGCCTGTTGTTGTAGAATTCTCTAGTTTCTTTGGAAGGATACAAAAGAAATAAAAGATATGACTATGCCCTTAAGGAACTTAAGTGTGAGTGAAATGTTTTTGAATATACATACATGACAAGGGTTTGTTCACTTAGCATTTAATGTGTTTTATCCTATTTATGTTTTTATCAACAACTCCACTTTTTACTAGATAAGTACCTCAGAAGCAGGTAGTATCATACCAATTCTTGTCCCCTAATTTACATTGTAAAAGCTTAAAAACTATTTTTGAACTAATGAGTAAATACAGTATGTGAGAAAAAGATCAAGATAATTGGAGTTAATCCAGAATTGCATGAATGAATCAATTTCCTGATATTCTCCTCACTTGTAAAACTCTTGACACAGAAGTGCACATTGATTTCTGTATAGAATGTTTTTAATTCAATTAACAAGTTTCTCTGTGCTCAATGGTAGTAAAGAGTTAAAGATCAGAAGGTACTTGGTGTTCTGCCATCAACAACAGCAGATTCCTCCAGCAGAACAAGATAATTTAATTGGGTTATAGTTGTGTGGCCCATTGTCAGATGTAGTTGGTGCTTTTTTCATTGAAAAAAACTAAGAACTTTTTTTTCTCCATTTACTTGCAG
Seq C2 exon
ATGCCAGACCCTAGAAGACTGTTGCTTCTTCTTCTACCAGTGGGTTCTCATTTTCCTCCTAATCTAATTATAGAATGGTAAACTCCCTGTGACTTTCCAAACTGACAAGCACACTTTTTTCCTCCCCCCTTGAATCCTCATTTAATGCAAGAACCCTCATACTCAGAAGCTTCCAAATAAACCTTTGATACAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170627:ENST00000305879:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development