RnoINT0068579 @ rn6
Intron Retention
Gene
ENSRNOG00000036831 | Gtsf1
Description
gametocyte specific factor 1 [Source:RGD Symbol;Acc:1310791]
Coordinates
chr7:145029699-145032317:-
Coord C1 exon
chr7:145032282-145032317
Coord A exon
chr7:145030240-145032281
Coord C2 exon
chr7:145029699-145030239
Length
2042 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CTTTTCTCATTTCCTTGCAGATG
3' ss Score
13.03
Exon sequences
Seq C1 exon
ATGGAAATGCACAGTAACTGTGAACATCTTTTTCAA
Seq A exon
GTAAGTATTTATTTCATTCCACTTTCTCTTCAGGTAGCAAGATTATCTGGACATAAAGCAGTTTGAGTCCAATTTTCTTTCAGATTATGATACCAAATTAAAACTGTGGGTGCGCATGTACTTTTTATATATGTAGCCTCTATAATGGCTTTACACACTAATAAATAAGCATTTACTACTTAAATTAGAATTCTGTTACCATGCTAAGCTCTTTTCCCTGGTGTCAGTGCACACTGCTTTCCTTTAACATCACAGCTGTGTTCTAGGTCTGTCCTGCCTTTTGTAGTGGAGTGAGATTAATCAAACAGCTGTGCTTCACTGCTCTGCAATTCTTTCTCAGTGCAGTACAGTTTAATCTTTTTTTTTTAAAAAAAAAACATATTCTTAATGGGCATTTAAATTTTTGGGATTTCTTAAGAGTCTTGCACTATTGATATTTAGTAATTTTTTTGTGCAAAACCTCACAAAAATCTCCTTTTCCCAGATAAAACCTGAAGGTCTTCCCTATGTGTGGTAGAGCTAAGCTTGGCTGCCTTGCCTAAGATTGCCCAGCCCTACTGCTCATGGGTAGAGACTTTAGGAAGGCTGGGATAGGATTCTATTTCAGCTGTCTTGCAGATAATAGTCCTTCAGCGAAGATTTATCAAATGAGTAATTGGTCTGTTGCTATCCAGTCCCCGTCTACACATTGAAGCAGATGAATCTGTGCTAGAGTCCATTTTGTACCAGATCTAATGTTTCTTCTGATAAGATGTGGAAAAGCTAAGTGGAACACCTAGCCAGGAATGGTGTCTCAGTCTTTAATCCCAGAACTCAAGAGAGTCAGAAGCAGGAGGATCTCTCAATTCATAGCCTGGTCTACAGAGTTCCAGGACTGCCGGAGCTATGAGACCCTGTCTCAAAAAAAGTTTATAAGAAAGTGTTAAAAAATAATAAAAGGAAATATCAGCTTGGTAGATTTTGACTTTAAATTGTTAAATGTGTCTGGAAACAAGAAAATGAAATTTCACCACAGAAGAAAGGTGTACACTGAGGTGTATCAGAAAGAATACATTGAACAGATTGGATAAATACGGTGAACTCTGAATTGTTCTCTTAGTATGTTGCACAAAATTATCTAATGGACAATACAGTATATAGCTGTTTAGTAAATAAGAAAGGCAACTGTATACTGAAAACTTAGGAGAAGCTTCTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCAGGAGAAGCTTCTTATAAGATAAAAACCAAGTGCTTCCTCCCACTCACCCCCACCCCCTTTTTGAGACAAGGTTTCTTGATTATGTAACCCTAGCTGTCCTGGAACTAAACCAGGCTGACCTCCAACTCATGTCTCTGTCTCTTGAGTGCTAGAATTAAAGGCCTGTGGTACCACACATTTGGCTTTTTAACTTCACTGTTACACATGCATGCTTGTTGCCTGTGGAGGTCAGAAGAGGGCATCAGATTCCCCAGTAACGGAGTTATAGATGGTTGTGAACCACCTTGTGAGTGTTGGGAATCAAACCCAGGTCCTCTACAAAAGCAACAAATGCTCTTAACTACTGAGCCATCTTTGTAGCCCTGAGTGAATTTAATTTTTAAAAGTCTTTATACACACCGATTACATAAACATCAGTGTTTATAAATTAATGAGTAATAGAGTATTTGAGAAGAAAAATACTAACATTAAGTTAATTAGAATTTATTTATTCAAGAATTGTTCTAGGTAGTTGTCTAGAGAATCACTGTACATTAATGACTGTGAAGAATGTTTGTAATTCACTTAGCAAGTTTTCATGTACACAAAGGTACTAAAGAAAATAGGGTCAGCAGGTCCTCAGTGTCCTGCCATTGACAACAGTGAATTCCTGGGGTTACAGTTCTGTCAACTGTTGTCAGATGTAGTTGGTACTTCTGTCACTGAAAGGAAGTAAAAACTTTTCTCATTTCCTTGCAG
Seq C2 exon
ATGCCAGACTGTGGAAGACTCTTGCTTATTCCTGCTACCAAGGGTTCTTCTTTTTTCTCTTTATCTAATTATAGAACAGTAAACTGTCTGTGACTTTCAAACTGGCAAGTACTTTTTTTTTAACTGCTGAGACTTTACTCCTCAATTATTTGATGCCAGAACCTTTTATATATTGCTGAAAAAGACAACTTGATAATTTGGTTAAAAACCTACTAACGTCAAATTAAGAAAAAAAAAATGACTGCCCATTCTAGTTAACGAAACAGTGATGTGAAGCTGTCACACAGAGTCCAGCTAACGTAGACAGAGAACTTGGGTTAAAAAGTAAGTATGTGTTCATGTTTCTGGCATACGTGGACCAAATTCTTTGAAGAATTTAAAAAACTGGACTTTTTATACCTTTAATCCCAATACTCGGGAGGCAGAGGCAGGATAGCCTCTTTGAGTTAAGGTCAGCTGGTCTACAGGAAAGCCAGCACTGCACAGAGAAACCATGTCTCAGAAAAACAAAAACAAAATAAAAACCTGGGCTTTACCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036831:ENSRNOT00000055275:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]