BtaINT0070302 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019322 | HABP2
Description
Bos taurus hyaluronan binding protein 2 (HABP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001014868]
Coordinates
chr26:34319208-34325558:+
Coord C1 exon
chr26:34319208-34319244
Coord A exon
chr26:34319245-34325447
Coord C2 exon
chr26:34325448-34325558
Length
6203 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCTGTTCCCATGTCTGTAGATT
3' ss Score
8.67
Exon sequences
Seq C1 exon
CTCTCCCTGCTGTCTTTTCTCACAGAGCCGGACCCAG
Seq A exon
GTGAGTGTGCAGACTGCCCTGGGGCTGCTCACCCCACAGGCTGGTTCTGGGATGGAGAAAAGGGATGTGAGTGTGCGTGTGCCCCCAGGGGTCCAATGTTTCGGAAGTGGCTTGGACCCCTTTGAGGATTTCCCCAAAGAAATATACTCCTGGGTGTTTATGTGTCCACAAACAGTGTTTCACACAATTTTGAGTTGACTGATGTTGCCTCAGGACTCCAAGAGAAAAACTGCTGAAGTGGTTAAACCCCTTCATTTCTCAGAGAAGGAAACAGGCTCAGAGAGGGGAAGTAACCTGCCCCAGGTCACACAGCCTACTAATGCTGAGATGAGACACTTTGCCTTGGCAAAGGGAGGATGTCTTGAGCAATGGCTCCAGGGATGCAGCCCTGGGCTACCCTACTCTCTCCACTCCATCAGTGGCAGGCCGGCATCTCTCTGTGGAAAGGGTGGTGCCATGTAGGCAGGCTCCAGGCTGGCCCATCCCTGCTGATGGCCTCCCACCAGCAGCCCCACTGGGATGCTCCTCCACCGGCTTTGTTTCCTCAGTGTTCTTTCACACAAGCTCTTCTCTCACAGACACACCTGCCACCTCTCACCTTCTCCCCATCCTGTTTCCTCTGTCTGGTACCCTGGGCTGAGCACAGCTGCTCCTTCCTGCATCTGGTCCCCTGTGGGTCTCTGTCTCCAGGTCCGAGTCTCTTTTTGCTGCTCTGAGACCCAAGGGAGTTAACTCCACTCACTACTTCACTTGGGGGGTAGAACGCATCCCCCACTGGTAGTGCCCCATGTTGGTCACCTGCAGAGGACACGAGCCAGGCACAAGGAGACTACAGTCATGTCTCAGCTTTGGATCAAGGGTCTCTTTGGAGCAAAGATGGCACTGGGTCAAATTCAGCTTGACAGTCAATATTCTCTGGCAGCAAAGCCCTACATGGGCAGACAGACTTGTGCCAGCTCAAGGCAAGCGACCTTATCCCACCCCATGTGCTTAGGGAACATTTGTGAAACTGGTAAGAAATATACATGAGTGTGGCATGCTGGGGTTTGAAAGGATCGGGGTCTTTGCTCAAAGCACAAGAGAGTGTTGAATTCAACAACATGTAATTCCTTGGAAGGATCGTATTTCAGGGAGGGCTCCCTTGGATGGCCAGACCAGCAGTGTCCACATGTGGAATCCAGGGAAGGTCCAAAGTCCAGAGATGGGACAAGCTGCCCCCACCCCAGCCTTCTGCACAAAACTTCTCAGGCACCACTGAATGGGCTGCTGTAGTCTGGGTGTCCAGGAGACACAGCTGCAGAACTGTGTGGTCACACAGAAGAAGAAACAGGACGTTGAAGTCTCAAGGGACCTCACTCTCCATGTATTTGAAGAGCAGCCCCACCCTTAGTCCATGAGGTAGCCTTTGTGGGAATTAAGAGGGATATCTACCTCAACACACTTTACTGCCACCTGCCAGAAAGTTGCAAAAGACATCTACAATGACTCTAAGTTTACGATGCCCTGGATTGTGCAGTGAACAGCGTAAAGAACGTGGACTATATGCAGTGGTTCTGCTGAACAGACGTCACAGAAAAGGGACTTTGCGTCCACAAAGCTCTCAGTTTTAATTAAACAGATTGGAAACTATAGTGTCAGATTTAATCTGCAAATAGTAGATCATCAGAGTTCTCAAAAAAAATCTCAGTGGGCTTTGGGGCTCTTGGAAAATAGTGTGTTCTCCATCCCTGGTGGTATTCAAGCACAGGCTGAAAAACCACTTAATGGACATGAGTTTGAGCAAACTCCAGGAGACAGGGAAGGAAAGGGAAGCCTGGCGTGCTGCAGTCCACGGGCTCTCAAAGAGTCGGCCACGACTTAGCAACTAAACAACAGCAATAGGGAGTGGAAAGAGTGGAATTTAACATGCTGAGCTTCTGGACTTTATAAGAACTCTGCCAATGGCTTCTGAGAGTTCAGTGAGTAGAAGAAGGGACCTTGGAGCAGGCCACCCACAGTTTTCCGAGTCCCTCTCAAGGTGTTCGGTCAGCCTGTGGCTGTGGAATGAGGTGAGATGTCGTGACTGGGTCTGTCTGCAAAGAACAGGTTAGGTTCTAAAGACTCCTCTGTTTGTGTCTGATTTAATTTCATCTGAGGGTTATACTTTGATGGAATTTTGTCAGATTCCCCGCCGTCTTTAGACAATGGTGGGGCCAGAGATACACTGTGCTCATGTCCACGGGCAAGCTGCTGCTGTGGTTGATCCTGCTGGAGTCAGTGCGTGGTGACGGCCTGGCTGGCACAGATGGGGCCAGGACACAGTCCCCAACGGGTGGCAGAGGAGGTGGCCATCAAACAACACAGACTCTGCTCATCTCCCCAAAGCAGGTGACACAACAGCCCACAAGCCTATGGAAATGCCTCTTCAAAGCCGGCTAGACTGGGCCCAGCAACACAGGCTGAGCGCATCCATCAGCTGTCCTGCCGCCTGCCAGCAAGGGTCTCTGCTGGGCTTGCCCTGTCAGCCGATTGGAAGCGTCAAATGCAGGCTGACAGGGCTGGGGTTTGGGGGCGGCCCTCGGAGGAATGGTTTGTGCCACAGTGATGGATGGTGCCAACAGGGACAGCGTTCCAGGGATTTCTACTCCGTTCCACACATCTGGCGAGCTCTTTAACCCAAACAGCTGCAGAGCCCCATCCCAGGAACTCTGGAGTTTTTCTGTAGGGACCACGATAATCCCAGTCCAGGGACCTGGAGCACGTGCCAAAGGAGATTTCCCAATGCATGTTACTTCCTAGAAGCTAAAACCCATGGACTTTTAGGAAACACAAACCCACAAGAGGCTCCCGGGCTCATAAAAAGCAAACTAGACTGGAGTCAGGTAGACTGGGGTTCTGATATCATCTCCTTCTGCCCTAACTTTTCCTTTTCTGTGAAATAGAAATAAGAAGACCTATGCCATTAGGGTTTTGTTTTGTTAAGGTTAAACAGATTGTGTGAAATCACATTTATTTAGTATAGTCACCAATACATAGAAAATAGTGAGTGTGTAATAACCTCTTATTTGGATTATTGGAGTTAAGATACTCTTACCATTCTTCCTGATAAATTCTAAAAGCAGACTCTGATAATTAGACAAATCCACAAGGGTTTCTTTTTATACCTGATATGAAATACTTCTGACAGCTGCCCCATTCTTCCCTCAAAGCTTTCTCCTTTTCTGTAGACTAGAGAAAGTTTCTGATAATCTGTATTTGAACCTGGAGTGATTTTTTAAAATCTGCCAATGGAACCAAATTTCATGTCGGGCTGCATGCAATCCCTCTCTCCCCAGGTAAGCCCTTGGACAAATGTCTATACTGCTGTCAAGCTCATCAGGCACTGTCTTCACCAAATATCTATGACCCAAGTCTCACAGTTTCTCTCCTGAATTCTCTGTTTACTCTAAACCAGACAGACACCATCTTTGCTGGCAGAGCCGTGTGCCCACCGTGTGTCGGCTGATCAGAAGGAAGGGAGGCTTGGCCCCCGAGGGAAAGCTTGATCTATCAAATACATATGTCAGGGGCTAATAGGGCTCTGTGTTGGGCACTGTGGAGCGAAAGAGAAGAACCGACATGGCTCTTACTCTTAAGAAGCCAACTATGCAGTTGGAGGAAACAAATCAGATAGACCATGTTAAATACGAAGTACAAGAGCTATGCCCTCTGAGATTGAGCCATGCAACCTAAAATTCTGCAATCAGCTGAGCCATTGAGGAGTTCTAGTATCTAGAATTTGTATCCCACCAGCAACTGAATATTAATCAAGCTATGTGGGTCTGTTTGTTATTACTACATGATATAGTCGGCCCTTGAACAATGTGAGGGTCAGGGATGCTGACCCCAATATAGTAAAAAATCTACTTTGTGTCCCCCAACCCCTGCCCCCAGCTTAACTTCCCTGGTGGCTCAGCAGTAAAGAATCTGCCTGCAATACTGGAGACGTGGGCTTGATCCCTGGGTCATAAAGACCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCTTGGGAAATCCCATGGACAGAGGAGCCTGGCTGCTACAGTCCCTGGGGTCACAAAGAGTCGGATCCGAGTGAGCACACACACACACACTGCCTTGCTTAGCAGGACGATAATCAATATCTACGTGTTTCATTCCCTCCTTAGCTTCACTGAGGGGTGAGGAGGCCTTGTAAATAGAGCTGGATTCAAGTCAAAGCCCTCCAGCACACATTTCATCCATCCCTCATCATCTGGAAAAATGATACCATTCCATCTATCTATAAAAACCTCCCCTCATTTCCAAATATCTGCAATGGTCTAACCAAGATCAGCCAGTCTGACCCTCAACTTGTGGGAGTGATGGGAGAAATTACAGGAACAATTCGAAGGCGCTGATCTCTAAACACCTGTTGGAAAACAAAAATCAATTCTCCAAAGAAAAAAGAAAGAAAGAAATGGGGCCATCATCTCATTACCAAACCCATTGTCTCTGAAAAATGTCAGTTTGAAATCTTTCATGTCAAATTCAGAAAAACATTTTTTTCCCTTCACACTCTCCCTCTCTTTCTCTACTTTATCAAGCTAGCTGGAAAGAAACTTGATTTGCCCCAGGAAGACAATGGCCTTATCTTCAACCTAGATCCTCTTGCCTGGGAAGGTGGCCTCCTCTGGGAGCATTTTCATAGTGGGGAAAAGCGGCTCGAGCGAAATAATGAGGAAGCAAAGGGAGTCTTGACTTGACAGTGTGATAAATGAGGTGAAACTTTGGCAAGGAACCAGAGTTGGCGTATTCAAAAAGGAAATAAAAAGATAGTTCCATTTTAATGGGAAATATAAAACAGCCATTGTGCAAAAGTCGATTTTTCAAAGGCTAGAGTGATAAAGACTATCAGGGAATGACTGAGAGACCAGTAAGATAATGTGATTGATAATCAGGCTTAGGTAAAGTGGCATCCTCCGAGCCATCAGCTGGCTCTGTGGGAGTGCCCTTTCAAGTCGGCTATCTGCATTTGCCCCTACGTCATTATCATATGCATCTCCGGAGGGCTTTCTTGCGGCTTCAGCTTGCCGGCTTGCCACACTCCTGCCAGCTGGCGAGAGCAAAGTCAACCCTACTTCTCCTAAATCCCAAACTTCTCTCTGTCAGTCGCAGAGCTACCAACATCTTCCAAAGCCCCGGACAACAAAGAGCTTGGGTCCAGCCTTACACACACCTGTTTTCCCCAGTGGACTGGTCTAGTGTGAGATTTACCACCATGGCCAAGGCCACACACGGCCCTTTCTCTCAGTGGGCAGGATCTGTGAACCTTCTCAAGGTTGTTCTTGGGTGATTCCTAATTAACAGGCTGGATGTGCAGTGGGAATGACTGGACCCCTTTGACAAGGGTAAGTGTGAATTCTCTGAGGCAGTGTGAGAGGCCTGCTGAAGAAGTGGAGAGTGTGCACTTTAGGGGTTGTGCGGAGATAAGCTGCCTTTGTTCATAAGCTACATCTATTAGTGTGTGGTTTAAAGTAGAGATAATAACACACTTCCTAGATTTTCAGGAGAATGAAATGGGATGGTTCATGTAAAATGCTTAGTACCGAGCCTGGTACATAGTAAAGACTCAGTAAATATTAACGGTTATGATGACTCTATAGAAATAACTTGGGAGCAGTTTGATGCTGTGACCGAAAGGGAGGTGACAAATTTCTTTGACTTGATTGAGCTGAAGTGACTGGTAAAGTCCCACTGAGAAATTTCATTCATAGAACCACCCAACAAGGCATCCAAGTGCCCCTGGATCTGACCCTGGGCAGATCTGTATAGCAACTTGGAGGATTCCTAGACCCCAGTCATCTTCCTGTTACAGGTGAGGAAACTGAGGCACCGAGAACACAGTTGGCTGGTGTCCCAGGTCATGGTTAGCGAAAAGCCAGAACTTGACATCTTCTTCCCATTTCCAATCACGTACTCTTGACCTTGCCAAGTGCCAGTACTGGATCACTGGGTCATAACAACCCCCTCAAATGAAAATTCACAATGCTTGACCCCTTCTATACACCCTATTAGTGTCAGGAGCTGAAAAGACACAGGAAGCCTCTTTTAGGACCTAGAAATCTTCAGAAAATGGGGTTTTCAGTGAAATAAAATGGTGGCTTCTGTAAGTCTAACAATTAGGGTTTCTTCTGTCCTGTTCCCATGTCTGTAG
Seq C2 exon
ATTGGACTCCTGACCAGTATGAGTACAGCCAAGAGTATAATAACCAGGAAGAGAACGCCAGCAGTACCACTGCCTATTCTGACAACCCTGACTGGTACTACGAAGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019322:ENSBTAT00000025732:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]