MmuINT0075756 @ mm10
Intron Retention
Gene
ENSMUSG00000025075 | Habp2
Description
hyaluronic acid binding protein 2 [Source:MGI Symbol;Acc:MGI:1196378]
Coordinates
chr19:56298015-56306883:+
Coord C1 exon
chr19:56298015-56298051
Coord A exon
chr19:56298052-56306772
Coord C2 exon
chr19:56306773-56306883
Length
8721 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCTGTTCCTGCCCCTGCAGATT
3' ss Score
11.05
Exon sequences
Seq C1 exon
CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAG
Seq A exon
GTGAGTGTGCCATCAGCCCAGGTTTCTACCAACCAAGGGCCAGAGCATAAAGGCTCTCTTATAGGACCTTGGGATTCGGCTGGTTTCGGGGCATCACAGAAATCCTTGAGAATTTATCCAGAAACACTGCAGCTGTAAGACACTTCACACAGCTTTGAGCTGCTACTCTCAACTACTTAAGGGAGTGGCTACAAATGTGGTTAAACTCCCTGATTTTACAGAGAAGGGAAGCAACTGGTTCCTTGTCCATTAGTGACTGGGGAGAGAAAGAATATGACTGAACAAGGGGCCACCCAGTAACTCCATTTCCTCATAGGGAAGCCAAGACACTAACGGGTAGCTTCACAATGAGCTACTCCAGTGTTGTGTCCTCCCTGGACCACCATCTCCACTCCTGTTGGGCTTGGGGGCGGGCAGACACCCCACAGAAAGTCTCAGGTTGATACCAAGGCTCACAGCACTGAGAGAGTCCGGTAGACCCGAGGTAGATGCCGTGTTCAGCATTGGCATGGTGTTAGGACTGCATTCAAAACTGGGCATGGTGGATGCACCTGTAATCCCAACACTTGGGAAATGGAGGTAGGAGAATCAGGAGTTCAAGACAGGCTTTAGCTACATAGCAGGTTTGAAGCCAGCCTAGGCTGTAAGAGATCCTGTCTCAAAACAAACAAACAAAAATCAACAACAACAACAGCAACAAACAAAAACAAAAGAAAAACCCAACTACAGACCCATAAAATGATTGCATCAAAGTAGATTGTGTAGTAAAGTATCTGACATGCCCAGTGGCCTGGGCTCTTTCTCATAGGGTCTGTCTCTCCTGGACTCACCCTGTCACCTTGAACCCTCTCTGTTTCTTCTGCCTAGTGGCATACCACCAAACAATAACACCCTTCAGTTATTGAGTTTGGGGTAGAAACTCCTCACTATTCCAAAGGAGTAAAGGCAGACATCCCCTAAGGGACTAGGTTGGTCATGCTCAAAAGGCCAGAGCAGGCAGCCTGTGCACGAAGAGGACAGATGTGATTCCAGCTTGTGAAAAGGACTTACTTATAACAAAGATGGTGACCACGAGCAAAGTCCTGATCAATCATCAATATTCTCCAGGAAAGGGTGTCTCTGGGTGGGTAGATAGATGGTGACATTTCAGAGCAGATGACATAGACTTTCACTCCATGCTCATGGAATAGAATAGAATCATGTGCCCAGGTGGGCATGGACCACAGAGGGACTCTGCATCTTTCCCCAGACCAAGGAAGAAAAGCACACCTACTCAGAGGCCCTAGTTCAGACTCCTGGCATGCATGGAGTTCAGAGAGGAGCCAAGGCCAAGGCTGGAAGGGCGTCATTTCTCTAGCCTCGAGAACACCTTGCTCAGACATCAGCAAAGGGTTCTTGGACTTGAAAGGTCAGAAAGACAGTAAAACATAGCTGTAGATGTTATGGGGTGGCAAGGAAAGAGACGGAGGCATAGAAAGGTCAAAGAACCTTGGTTTCAATGTCCAGATGTGTCTTTATGTATGTATGGCTCAGTGGATAAAGTGTTCGCTTTGAAACATAAGGCATGGATCCAGAACCCATGTGAATGCTAGATGCACAGGGCAGCCACCCTGTCATTCTCACCTTAGAAGATGGGGACAGGGATCCCTGGGACAAAACAGCTGGGGAGACTAGCTGTGGCAATGAGCTCTGGGTTTGATTAGCTGTAGTAATGAGCTCTGGGTATGATTGAGAGACCCTTTGAAAGAGCAAAATGGATCAACAGCTAAGGATGATTCTTGATATCACTCTGTCCTCTACATGCACACACACATACACATGCCCACACATGTGCAATAATGCCTACAGGTGTGTGACACACACACACAAACATACCATACATGTACCACATACACACACACACACACACACACACACACACACACACACACACCACACATACCACACATACCCATACCACACACATACATACCACATACACACATATTAAACACACACTTACCACACACAAATGTACTATACAGGTATTACACACACACACACATATATATATACACACACATACACACACACACGCCACACACACATGAAAAAAAATTCAAGAAGTATCTTCAACCTCAAGGCACTTTATTACAGTCTTCAAGAATGTTGTATATGATGTCTACAGGGTTTATCATGTTCTGGAATGTTCAGTGAACTGGTTGAATGAAAGAGAGGGTTCATTCAATGTGTCCACATGGCTTTAGCTGAACAGATTACAGGCATAGTGTCAGCTTTGGCCTCCAGACAGAAAGAATTTCCTAACATTAGACTATCTAAACTTTGAACGGGCTGATGGGATCTTGGGGAGAAGGGGTGAGCACCCCAACACCAGAGGCATCTAAGGCAAAGACTTAAGTTGGAAAACAACTGAGGACAGCGTGGACGATGTGAGACTGAGCATGCCAAGACACTGACCCCAAGGATGCCGCAGATGAACGTCCGAGGATCAGTAAGCAAAGGAAACAGGTTGGCCCTGGCCAGAGTCTATCTCCAGATGCTCTGTTGGCCTCTGGCTGTGGACTGAGAAAGTTAGACTTAAGGCGTCTCCTTGTCTGGTTCCACTGCACATGGAGCTGTTCTTTGATGAGGTTCATCAGCTCCATGCTCCCCTCAGACAGCAGCATGCTGAAGAGATGCCCTGCTCATGCCCTCAGGCAAACCTGCTTCCTCGGTTGGTCTTATCGGTGCCAGTACATGGCAAGGGCCTTGCTGGAGCAGAAGGTGCCTGGTCCCCCGTCCCCAGTGTGTAGTAGAGGAGGTGGCCATCAAACAGCCCAAGCTCTGCCCGTCTCCCCAAAGCAGGTGACACACAGCCGGCAGGCCTGCGGAAACGCATCTTCAAAGCTGGCTTGGCTCTGCCCAGCACCACAGGCTGTGCCCATCCGTCAGCTGTCCTGCTGCCTGCCAGCGAGGCTCTCAGCTGTGGTTGCCTGCCAGCGGGGCTGGAAATGTCACAGGCAGGCCGACAGGGCTGGGGCTTGGGGAAGGCACCTCAGAGGAGCCAGCTGTAGCACGGTAATGGATGGAGCCACCCGGGATGACATTCCAGGGATTTTCATTCCATCCCACACATCTGGCAGGTTCCTTCAGCAGAGCAGCTGTGGAGTTCCCACAGCACTAACTGCGAGCTCTTTCCAAGAGGCCCTCACCGTGGGCCACAGGAATCCTGGAGAGGGACGAGGGACATGTGCTAGCTGAAGATTTCCTGAGCAGGCCGCTTCCCGAAAGCCAAAAGGCCAATGGTTTTCTAACCTAAACCAAGAGATGCCCAGCTCGTGAAAAGGCACAGGGGACTTGGAGTTAGATGAACCCAGATGTGATGCCCTTCTGCCTGGGTGTTTCTATCTGTAGAATACAGTGATGATTATCCTTACTGGGGACGTTGACAGTTACGTCGAATTTTGTTTACATGCAGTTTCATGGAGTATCTGACACACAGAAAATGTTTAGTGTGCAATAACCTACCATGAGAATTATTTGTGTGAATGCAGAATACCCCTAACTCTCTTCATAGTTCTTTCTAGCTAGACTTTGGTAAAGGAGCAAGGCCACAGGACTTCTTTTTATACCTAGTGTACATGCTTCTGAGAGCCACACTCTTCCCAAGGTTCTCCCACTCTCAGTACTTCAGAGGCAGTCTCAAGCAATCTCAATTTAAACCCAAAGCAGTCTTTGTATGTGTGCATGCAGGTTTGTGGCCTTCAGAGGACAACCTCAACCTCAGGCATAGTTCCTGAGGCAGTCTCTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTGTCTCTCTGTCTCTGTCTTTCTCTCTCTCTTCATTTTGTGTGTGCTGCACATATGTGCATATGACATTATATATACATATACATGTATATGTATAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTATGTATGAATGCATGTGCACACATGTTGCAGTGTTGGAGGTCAGAGGACACCCTCTGGAGTTGCCCGTGGCCTACCCCTGTGCTTGAGGCCCGTGGCCTACCCCTGTGCTTTTAAAAATGTGGATTCTGGAGACTGAATTCAGGTTTCCTTCCTTTCAAGGAAAGCACTTTACCAACTATGTCTCTAAAGAAGTTTTCTCCAGTCTGCCAGAGCAGGACCAGAGTTCATGCCAGACAATAGTTCCTTTCTACCAAGAAAACAGACAGTTTTATAGGCTTATACAAAGATCATCAGTTTGTTTTTTTTTTTAAGTACAAATCTCACCTACATTCTTCCTAAGGTTACCCCTCATGCTGCTTCAAGCTGGGCCAGTCACTCTGTCACACATGGCAGATACATAGGGCTCTGTGCTGGGCACTGTGGGAAGACAGAGTTTTTAAGACTCAAGGAAACAAATCAGACAGGTGTGTTAAGTCCCAGGGCAAAACAAAGAGCTTCCAGCTAAGACATCCATACTCTGCAGTCAACAAGGCTAGTGAGGAACGCCCCCGTATCTTAACCCCCAATCCCATGAGTAACCCAATGTCAATCGAGTCCTGTGTGTCTGTCGTTGTTATTATAATACAGGACCCCAGCTTGGAGATGTCCATCGATATCCATGTATTTAGATATTAGTTCCTTGGGTGCAGTTTAATCTGCATTCTTCTAGTCTAGACCAGGTCTAGCTGATCTGAACTGGATCAACTAGAGGTCGCTCTGGCACCTCATTTTGCAATTGGCTGGCTTTCTTGTGTCTGAGGCTTCACCTGGGCGTGCTGTTGACTCATGTGGCAAAATAGGCCAGACTACTTCCACAGGAGTCAGGAAGGCCCAGGAGAGTGGGCAAGAAGAACAGGGGAGAAGGAGGAAGGAAGGAAGAAAGGAAGGGAAAAAGGGAGGGAGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGAGAGGACAACATGAGGTTTTAGGGTCAGCCTTAGAACCAGTCTCAAAGTTAAAATGAACCAAGAGGTGGGATATGAACCATCTCTGGCTAAAATAAACTAGGAAGTCCTGCTGTAAGAGAGGAAAGATGCAGGAGGCTGGAGAGTTGGGGCATCCATGCCATGAGATTGGCTCAAACCAGATCAAATATCCAGCATTGAAAGCAAAGACACCAGGCTTCCATGTAACTACACCCAACATCCCTTCCCCTACACCATTCTCAGTCCCCTCATCTTGCTTTCTCCTCAAAGCTATTCAGACTGGAGGCTCCTCTAGGACAAGGTCACATTCCATTCTTGTCGGTCTACCTTTATAACACTCTGTGGTCCCCAGTGCCTTCCACCACATGGCATAACACATCACCCACTGTAGGTTTGCTATATACTGTTAATACATACAGTGGGATGCAGTGTCAACATTACAGAAGAGGCAGGGGTCTGCCCATATGGAGAGGCCTTGATAACGTCCTTGTGCAGCCCTCTAACTGAATGGCTTCTCCTTCCCTGGTGACCTACTATGTCCACCTCCACCTGGGACCCTCACAACTCTCGGACTTAACACATCTCTATTTCATGCTTTTTAAATATGTGAGTGGTAAGTGAATATGTACAGATTTGTGTGTTTGATTTTTATATATGTGGGTGATGTGTGCATGTGTGTGTATTTTGTGTGTGAGTGCCCATGTGTTTATGACAAGTGCATGTATACAGGTGTGCATGTTTCATGTGATTTTGATGTGTGTGTGTGTGGGGGGTGCATGTACTTGTGTGTACAAGTGCACACACATTTATGTGTTTGTGTTTGTATGTGTATACACATGTAGAGGATTTCAGTTAACAGTGGGCTTTGTTCTCAATCACTTGCCATCTACTTTTTTTTTTTTTAAATAGAGCCAGCCTTTCATTGGACATAAGTCTCACCAATTCAGCAAGAGTAGCTGAGAGCTCCAGGGATCTCTCTTCTCCACCCCACGCCTCCAAGCACTAGAATTATAGGCATATGTCATCATGTTCTTCTTATGTACATACGCGGTAGATGCCTGAACTCAGGTCTCAAGCTTGAGTAGAAAGAATTTTGCCAATGGAGGATCTTCCTAATTGCAAAGCAGGGCTGTGGAGTGGGAATCCTTAATAACACAATCAAGATTAGCCAATCCGCCCTCCAATTTGTGGAACTATTGAGAGGGGATTCGATGAGTTCCCTGAGAGACTCTTATCTGTAAACACCTGTAAGAAAAAACAAAATAAGTCCAGCAGTGGAAACAAAGATAGATAAATCAGTGTAGCGATCAACTCTCTGTCTCCTTCAAATGTCAGTTTGGAACCTTTCATGGCCAACTCAGAAAAACAGTTTTCCATCACCTTCTCCTCCCTTTCTCGACTTTATTATGCCAGGAAGACTGTGGTCTTATCTTCAACCTAGACCCTCAACTCTAGAAAGGTGGCCTCCTCCGGGAACATTTTCATAGTGGGGAAAAGCAGTCAGGGAAAAATAATAAGCAAGCAAAGAAAGTCTTGACTTGATGCTCTGATAAATGAGGTGAAACTTCGCCAATGAACCAAGGTTGGCGTATTTAAAGAAGGAAATAAAAAGAAAATTCCATTTTTAATGGGAAATATAAAACAGCCACGTGCAACAGTCGGTTTTTCAGAAGCCACAGATACAAAGACTATTACAGAAGGTTGGGAAGATGCCAGAGGTAGCGTGCTTGGTCCTCAGGCTTGAATGGAGAGCGGTCCTCCACGCCATCGCTGCCTCGTTGGGCTGCCTTTCAAGCCCAGCGTCGGCATTCAGTCCCGCCTCATTATCACGGATCTCTCTGGAGAGCTTCCTTGAAGCTCCCTGTGCCAACATGGCATCCTCCCATTCTCCCAATGAACTCAACTTTCTCCCTGTTCCCAACTTCTCTCCTTCCACCACAGAGCCTCCAGCATCTTCCAAGACTCTATGTCTCAAAGTCTCATGTAACTGAACTTTCTGTCTGTGAGCATCATGGCACTCTGCCTCCATTGGTCACCAAGGTCCAGGAACAGTCTGAGGGCTGTAGGTGGGTGTCTGCTAAGTAGCAGGCTAGACATTCAGTGGGGATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTAGAAAGAACCTATTAAAGCAATTGAGCACTGTTGTTGACCTAGAAAGACATGGTGGTTGCATTGAGACAAACTTCAGTATAAATCTGGCTGTGAATTAGCCATGGGACTTTGGACACATTGCTATTCTCTGTGGCTTTCCAGATTATGTTGAGACGGGGCCTCATGTATCCCAGCCTGGCCTCACACTTCCCACAGCTAATGATGGTTTGGATGCCTGATTCCTTTTTGCCTGTACCTCATAAATTCTGGGTTTTTTGTTTGTTTGTTTGGTTGGTTTGGTTTGGTTTGGCTTGGTTTGGTTTTCTGAGACAGGCTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGATCTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTATAGGCGTGTGCCACCACTGCCCGGCTACCTAGTAAATTCTGACGCCATAGGGCCAATCGTCAACACGACAACCTCTGTGCTCATCTAGGAGACAAGCCTCCAGACACACCTGTGGGGGTTATTTCCCCTCTGCACATGTATGTAAGGACAGAGTATGTTGACTGGATCCATTGAGGAAAGTTCACCATTTCCTGGCTTTAGATCGAGACTGCCTAAAATGGAGAAAGCGAACTGGGCGCTAATGTCCACTCATCCTTCTAATTCTTCCTGAATGTGAATCCAATGAGACCAGTGCCCCAAACTCTTGGTGCCTTGGCTTCCCACCATGGGAGACTGTACCCCTAACCTGTGAGCCAAAATAAACCCTCCCTCCCTTCCTTAAGTGGATTTGTTGGGGGATCTTTATTTTATAGCACATTGTAAGGAACTAAGACATTTGGGATTACCGGGCTCTACCACAGCAGTTCATGCAGAACTGGGATCCGCGTATAGAGGCAAGCAATCTATCACTGAGCTACACCCCTGGCCCAGCTTCCCTGGTTTTTATGAAGATAAGGCACCTGCAAGCATTTAGCACAGGCCTGGTAAAAGCTCAGTAAAGATGGGCCGTTAAATGCTCTGTAGTGGCAACTGAGAGATGTTTGACCCAAGAGGAAAGTGACAAGTGCCTTGGACTTCGTTAAACTGAGATGACTAATGAAGTCTCATGGGGAAAGTCCTACGTCACTCACAGTGACAGCACCATGTGCTCCATCTCTGGTAGACCCTGTGTAGATATGTGAAGACCTGGAGGCCACAGGATGCTTTCTGCTGTTCACAGCTGAGAAACCTAAGATGTGGAGAATACATAGCCATTGTCAAGGTCACACTTAGTGCAAAGTTGGGACTTGATCTCCTTCTCCACTTCCCCATTGTGCTACCATGCCAAACACCAGTAATGCTTTGGAGGACCATAATATCTCCCAAATTAAGCATCACCAAGCCTGGCCCTCCTGTCTTCCTGTGTTGCTGGGAGAGCTGAAACGCCGTGTAATTCCTCCTTAAAGAGACCGAGCTCGCAGGGAAGAGGTGGTGCCCTCAACCAGGGATGACTTTCTTAAGCCTGATGACTAGGGTGTCTTCTGTCCTGTTCCTGCCCCTGCAG
Seq C2 exon
ATTGGACCCCCGATGACTATTACTACAGCTATGAGCAGTCCAGCCCAGACGAAGACCCCAGTGTCACGCAGACCACCCCTGAGAACCCCGACTGGTACTATGAAGACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025075:ENSMUST00000078284:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types