BtaINT0071375 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004746 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr19:63823815-63827270:-
Coord C1 exon
chr19:63827090-63827270
Coord A exon
chr19:63823934-63827089
Coord C2 exon
chr19:63823815-63823933
Length
3156 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
GTTTGCCCTGTGCCCTGTAGGGT
3' ss Score
9.07
Exon sequences
Seq C1 exon
AGGGTATATTTCAGAAACCGCTGGGTGAAGACTGTCCACCCAGTTGTGCATCAGTACTGTTTGATCTCAAGCGCACATTCCACCTTTCAGATGCCACAGAAAGAAGATATTCTGAAACACCGAGTGGTGGTGGTTACATTGAACACTTCCCAGTACCTCTGTCAGCTGGACCTCGAACCTG
Seq A exon
GTATGCTGACTCCAGACCCAGAAAGAGTGACTGCACAGGGCTTCTGCGTTCAGTTTAGACCAGGCGTTGGCGTGTGGGCCATATCTGGCCTACTGTCTTAGTGAATAAAGTTTTATCGGATGGAACACAGTCGTGCCCACTCACTCCCTATATTTTCTTCGGACGCCTCTGTGCTTCAGCAGCGGAGCTGAATAGTCGCGACAGATGCACGGCTGGGGCCTGAGACGTCACTGTTGGCCTTCACACAGAAAGCATTACCCATCCCTGCTTCAGACATTTCAGTGGCTGTTACTTTGTCTTGTTCTCTGATTGATCAGATGGTATTTAATATTGATCACGTGAGAAATTCAAAGTTGGACAGCTTTTTTTTTTACAGTTTTCTCAAGTATATAATTTTAAAATACTTGTGCATTAATACAGTGTAGAGACAACAATTAGGATAGTTTTTTTGACATACTATTAAGATTATTATATTTAATTATAGGAACTATGTAAAATCAAATATAGAAAGTACAGATATAAGGTAACAAAAAGTTCTGATAAATATGGCAAAGCTTAACCATCAGAATGTGTGTCACTTTAAGATAGTTGCTTTGGAAGGACATTCATTTCTTGTTCTAATATTACAGTTGTCGACATTGCTCAACCCGTTTTTGCTCTCTCCTTTTGGAATTGCTTTCAGAGCCAGTACCAAGTTCTTTTCCATTTCTGAAAGGTAGAGACAGTTCCCTTCCCCTTGTATTCCTGGCACCTGGCCCAGGGCATAGGCACCTGGAGGCCCTTGATAAACCTCTGTTTATCTTAAAAAATGAACAATGGCCAAACTTTCTCTTTTGAAGGTAGATTTAATTTTAGAAAAGCTTCAAAATCTTTTGGAGACATGTCTGGTAAATAAGGTAGGTTATCAAACTGAGCAATACCATTAGGGGTATAAAAAAAAAGAGAGAGAGACGTGCCTCTCATGTAATGAGACTTATTTTTCTTGTGCACGCAGCTCATAGCTGGCTGGTGAGGGCAGTTACAAAAGCAGAGTTTCAAAAATGTTTTGAACAGTGGCTGCATCCATTGGAATGAGTTATATTTCCTCTCAACTGACTTCTTTGATGGAACAACACTTATTTGCAATGTAAATTTTGGTATGTTTATTTAACAATCAGTCTCATTACTTTATGATTATACTCTGCATATTTGCCACGTAAATTAAATACCCAAACCTCCTAAACAGTATAGTTTTGTGAAGAGTAAAGAATGGCTTTGAAGAGCAAGAGTGTAGTACATTTATTGGAAGTCAGCTACCTGATTTGTTTTGGGCATTGTTTATACTTTAATTCTCATGTCAACTCATGGAGGGTTATTTTAGACGCTAGACAACCAAGGCCCAGGCTAAATCAGTTTGACTAATTTAGGTTTCTTTTACTAGCTTAAGCTGTAGTATAACAATTTCAGGATTTATTCAATTCCTGATTTAAGCCTAACTATATTTAATTAAAAAGTTATCTAACAGAAACAGTAGATTTTTTTCACTAGTTTCAGTTTTTCCAATTCGATCCTGTAGTTACATAGACATCTTTTAATTATTCTTACAGAACAAAAAGCACAAGTTCTCCTAAACAGGGAGAAAATCGCATGTGTCCACATCATGCTTGGGCCACTGTCATTAAACAGACAACAGTTACTGATACTTGTATTGTCAGCACAGCCATTTATTTGAATAGACCACGATGAAGGTAGTGGCGGTGGTGATTCCTGTCCGTCAGTAAGATTTAGAAAGTTTCCAACCTAGAAACAAGTTGCATAGAAAGCTGTATAAACAGACTGTTTGGAACTCATTGCTATTCAGAGAAATAGAGGTTAGGTTCTTGGGCCAACTCACAGGAGGCTAAATAACCTAGAGAGTTTATAGCAAGCCGTTCTGTTGAGAAAGCGTTTGTGTTCTCTGCTGTGGAGTGAAAGCAGGGCCCCCAGCTTGGAGCTGGCGGCGGGAGCAGCGTTTACTCCTGCACGTCGAGACAGCAGGGAGATTCCCACTCTGCTCCCGCTCAGGAAGGGGCACAGGTTCCTCACCCTGTCCACAGATTCCTGTGTGCAGTGTGAGCGACAGCAGTGAGCCAGGCCTGGGATGTTTGCATCTGGGGAATATTTGATAATGTTCGTTTTTGATGCTTGTTGTATCATTTTTTTTCAGACTGGTGATTTATTTTTTTTCCAACCAGGATAGGTTCTTAGACTAAAAAATTATATATAATCTGTCTGTACACACACACACGCACATACACACACACGCACAGACACACACACACACACAGACACACACACACAAAATAAACCTAAATAATCAAAATAGTGAATTTGCTAATAGATAACCTTTGTTTTTGGTCAAAGATGGATTATAACTTTCTCTTTTATATTAGATTTTGGGTATGATATTCTTTATCGTATGTCTAATACGTATGTTTAAGCTAAAGTTACTCATGAACTACCATTGTTTTATTTTTGGTGTTTTAGCAAATAAACAGTGAAAGGACTTGGGCCTGTCACTGTCTCATTGCTAGCTTTTCTTTGTGGTGAGAGCTGCTATCTTGCGGAGAAGGCAGTGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCGAAGAATCAGACAGGACTGAGCGACTTCACTTTCACTTTCCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTTCAGTATTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTAGTGGGCTGCCGTCTATGGGGTTGCACAGAGTCGGACACGACTGAAGCGACTTAGCATCAGCAGCAGCTGCTATCTTGAACTCTAAAGACTCTTTCACATGCAGTGATGGAACTTGTTAGTCTGGAGGCCAGGAGGTCCAGGTGCCATTTATTGTCTATTATTGAGTAAAATAGTTATTCTTTTCAACTTCTGTTTTCTAAATAATGACTGAAATGTACGTACAGGCTTCTAAATCTAGGATTGGCATTAAAGCACTCAGAACTCTTAAATTAGGCCTCTGAATTCTTTCCTTAGCAGAGAAAACAGGACTTCCTCCCTTTATCGCTGCTGTAATGGCTGTCCTGTGTTTGCCCTGTGCCCTGTAG
Seq C2 exon
GGTTTTTTACTCACATCTTGTTAGACGAGGCTGCCCAGGCCATGGAGTGTGAAACCATCATGCCTCTGGCACTAGCAACTAGACACACGCGGGTTGTCCTGGCTGGCGACCACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004746:ENSBTAT00000006233:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(46.7=68.9)
A:
NA
C2:
PF130861=AAA_11=FE(43.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]