RnoINT0070069 @ rn6
Intron Retention
Gene
ENSRNOG00000003213 | Helz
Description
helicase with zinc finger [Source:RGD Symbol;Acc:1307049]
Coordinates
chr10:95853352-95856091:+
Coord C1 exon
chr10:95853352-95853530
Coord A exon
chr10:95853531-95855972
Coord C2 exon
chr10:95855973-95856091
Length
2442 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
CCTTATGTTGTCCTTTCTAGGGT
3' ss Score
11.88
Exon sequences
Seq C1 exon
GGTGTATTTCCGAAATCGCTGGGTGAAGACTGTTCACCCGGTTGTGCATCAGTACTGTTTGATCTCAAGCGCACACTCCACCTTTCAGATGCCCCAGAAGGAAGATATTCTTAAACATCGAGTGGTGGTGGTCACACTGAACACTTCCCAGTACCTCTGCCAGCTGGACCTTGAACCTG
Seq A exon
GTATGCCCACTCGCCACAGGCGGCTGTCTCTCAGGGTTAGAGGATGCGTTCCAGTGACAAGTGCTGTTCTGTGGGCCACCTCTGGCCAGGTCTCTTTTTCACTGGAATGCAGCTGCCTGTGCCCATTTATTAACTTGTTTCTTGTCTGCAGCTGCTTTTATGATGCAAAGCTACGGCAGCATCCTCTGCAGGGACAGAAGCTCTTTGGCCCTTAACTGAAAAACATTTGCCATTCCACCTGTTCTCTAGTTGGTAACTGTTCACTAGTGATCAGTTCAGATTTGGACAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTTGTTGAGGTTTTTGTTAAGTTGCTTTTGCATTTTGTAATGTGGAAATAGAAATCATGACACTTGATTAAGATTTCTTATTTTCAAAGATTTATTTGTGTGTGTGTGTGTGTGTCTGTCTGTGTGTGTATCTGCCTGCACAGGTGAGCTAGAGTGTATATCTGTGTGTGTCTGCATGCACAGGTGAGTGTGTGTGTCTGTGGAAGGCAGGAGAGACCTTCAGGTGTTCTCTTCTGTCGCTCTCTGTCTATTCATTTGAGGCAGAGTCTTCCACATATCTAGCTCACGTTTTCTTGGCTAGGCTGGAAGCCCACAGGCCCACGTCATTCTCCATGTGTCCTCTTTTGGAGCTGGGCTACAGGTATAGGCGAGATGCCCTGCTTATTATGTGGGTGCTGTAACAGCACTCTAGTCTCCTCATTGTGCAGGAAGCACCCTTCACTGTTCAACCCTCTCTCCAGCCCCTAAGGTTATTATACTTAGATGCTAGGATTGTGTAATAATCACTCTTCATTAATTTAAACTTTTTATTTTTGTGTTTTTGAGACAGGGTCTTGCTTTGTAATTCATGCTTGCATTGAGCTTGCTATGTAGCCCAGGCTGGCCTTAAACTCACATTCTTCTGTCTCAGCCTTCCAGTGTGCTTACAGCTGTGTGCCAGCATGCCCAGCGTGCCCAGCTCTGTCTGATTTCTATGAGCACACGAGTCTAAGCTGGTGAGCTGTGAGCATGAGAGGACGGTCCAGTTGCTTTAGCTGGTTCTTCAGCAGGGCTCTCTCTGTAATTGTTAACACTGTGCATTGCTTCCCCACCTCCTGTTGGAATTGCCTTTAAAGCCACTGACCCATTCTACCGAATGTCTGAGTTCCTGGAAGGCACAGGCTGCTCCCTTCACCTGTATTCCTGGCTCCTGGCCCAGGGTGTAGACACCCGGAGTCCCTCGAGTTTAAGAACTTGAAGATCAGAGGTTACATTGATCTCAAATGAGGCAGGAAGGCTTTGGAATTAATAGGGAGGTGACTAGCCTGGGCACAAAGGAAGGCCCCCATTGGATGAGACTTCCTCTCCCTGCCTTGTCATCTCTCCGCTGGCCGTGAGGCACTCCAGGGCTGTGTTTAGGAGGTCATGGCCCAGGGGCAGCATTGCAAACAGGCCTCTGTGGTGGTGCTTGTGCTTACTCCATGCTGACACCTTCAGTGTGGGCAGAGAGGGGGGAGGGGCTGGGAAGGGCTGGAATGGAGGCGCTGGGCTCACCTGGTCTCCAGGTTTCTCACTTCAACCCCATGGTGGTTATTCTACAGTTAACAGAACTGAGACTCAATCTAAGTCACTTTAGATAATTAATTGCCTTTTCTTTCCATTATTTTTCTTTTTTACCTTCTTCCTCATTTTTTTTCTTTTTGTTTTTTGAGATAAGTTTTTTTCTATGTAGCCCTGGCTGTTCTGAAAGTTATTCTGTAAACCAGGCTAGCCTCGAACTCAGATCCACCTGCCTCTGCTTTGAAGTGCTGGGATGAAAGACAGGCAGGTGCCTTTAGAAAAGGTGCCTACCAGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCACAAGGCCTGGGTTCGGTTCCCAGCTCCGAAAAAAAAAGAAAAGGTGCCTACCTAAGTAGTAGACAATAGTTTCACGATTTATGCAGTGTCTGAGAAAATGTTAGCAAAAGAAAATAGATACTCTTTTTAACTTTTTCGTTTAAAAATATTAAAAACATTTGTTTTTTGTATACGTGTGTGTGCCTGTTGTGTGTGCATGTGCATGCGTGCACACAGATGTGTGAGTGAAGTTGCCCTCAGCATCCAGAAGGTGTCACATCCCTGAAATTAAAAGTGGTTGTGAGCTGTCCACCATGGATGCTGGGGAACAAACTCAGGTCCTCTTCAAAGCAGTACATTGACTGTTAACCTCTGTGTCATCTCTCCAGCCCCTAATTTTTTAAAACATATCGTGTTGTCAGGTGATTGTCTAGATTGAGGATGGCCTTAGATATGTACGACATGGGTTAACTGAACAAACTTTGCTTAGTAGAGCAGGAAGCAATTGCTCTGTGACGGTTCTCCTTATGTTGTCCTTTCTAG
Seq C2 exon
GGTTCTTCACGCACATTCTGTTAGATGAAGCTGCCCAGGCCATGGAGTGTGAGACCATTATGCCTCTAGCCTTAGCAACTAAAAACACACGGATTGTTTTGGCTGGTGACCATATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003213:ENSRNOT00000030300:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(28.7=57.4),PF130861=AAA_11=PU(44.2=62.3)
A:
NA
C2:
PF130861=AAA_11=FE(20.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]