BtaINT0072266 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001146 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr9:81246872-81251958:-
Coord C1 exon
chr9:81251783-81251958
Coord A exon
chr9:81246974-81251782
Coord C2 exon
chr9:81246872-81246973
Length
4809 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TTTTTGGCTGTATTTTCTAGGAA
3' ss Score
9.93
Exon sequences
Seq C1 exon
ATATAAATCAAATGAAGATTATGTATATGTCAGAGGACGTGGACGTGGAAAGTACATTTGTGAAGAATGTGGGATTCGCTGTAAGAAACCGAGCATGCTCAAAAAGCATATCCGCACGCATACTGATGTCCGGCCTTATGTATGCAAGTTATGTAACTTCGCCTTCAAAACAAAAG
Seq A exon
GTACAGGTCTGATTTTTTTTTTTTTTTTAAAGAGGGAAAACTTTTTTTTACTGGCGGTTCCAGATTCTGAATACCGTTTTGTAACTGTCATAGACAATTAGGTGGTTTTCTTTGTGAAACTGTGACACTCATGAAATGTGTTTTCTTTCTGTAAGTGGTCTGAGGATGTATGAGACAATGAGGCTCCTTTTATGACTGAAGTAAGAGCTATAGACTTAGGTCCAGGCTAGTAGTCTCGAAGGAAGTGGCTAAGAATTGCCTGCATAGCTATTACTTCTTGTTGGAAATGTTATGTGGTCTAGAGAATCTTTGCACCAGTATTGAAATTCTGCAGGGAGACAACCCATTTCGGGGCATTAGAAAAGCAAGGCAGCAGCTGGGAAGAAAACATGTGCCCATGGTCAGTTTCAAGATTATTAATAATGTAGAGACCCACAGAGTCCCGGGTGGGCCTCTCCATCCACACTTGCATTAATTATGTATAGAAATTTGATCGCTTGTGTTCTGTGTATTTATGAGCTCAGAGACAATTTCTTACTCTCGGGCCACAGCTATTAATCTCATAAAACTAAGACTTGCCTTGAAATGATATTCTGTCTTTAAAAAATAAGTCTGTTTTTAACAGATAGTCTTACCTGAAAATATTTTATACAAAAATGTTGCTTCAGTTATATTTCTATCATTTTGTAAAATTATGAAAATATTCATAAACTCAGTGTTTTCAGAATACAAATAGTTGTGGAATAGAGATGATTTGACTTCTATAGAAGTATATTTTACTACTTACTGTCAAAGTATGCAGGAGACATGGGTTCAATCCCCAGATCGGGAAGATCCCTGGAGGAGGAAATGGTATCCCACTTTAGTATTCTTGCCAGGAAAATCCCATGGACAGAGAAGCCTGGTGGGCTACAGTCCATGGGGTCGCAGAGCCAGACATGACTGAGTATACACACACTCATGCACACACGTAGAAGTACTAATGGAACCCTATAGACACCCCGCCACTAACCTTACACAAACATTTTCTGATGTTTTAACTTTAATTTGCATACTAATTAATCTGCTCCACTACCCATCAAGAAAAATAAATATCAAGTAAAACTATCTTTGGTAGGGAAATGTGTACCTACTTTCTTTTATACCCCAAATCCTAAATTGTCTTTATTGGTTTGTCAGAAATGTAAATGTGTTGCCTCTGAGCATATCTGTTTTTTCTTTATTAAAAAGATATTTATATTATAATTATGCCTCTTTGAAGCCACAAAAAGGGGGAGGGAATGTTCATTTGCATTTCAAAGGAGATAAATATGAGGTCCTTTAAACACCATCCACTTTTGCACAATCAAGCCTTTTATGTAGAACTTCAGTAAGAGACTCCCTAGGACATAAAAATATATAAACTTTGGTTTTAAGAAATAAAGCTGATCCACCGGTCATTACAACTGATATTTCCTGGCCGTGTGAGTTGACTGGGTATAGCCTCCTGAAACTGTACCTGAGGAAATGTCACATGGCTAGATATTTCTATCATGCTATATTTGGCTCTGAGCTATTGTCTTGGAGTTTTAGCAGAAAATAATTTATTCTTGATAATTATCGGAGTTTCCTTGTCACCCTTTGGAAAAATACAAATGTCTTAGGATCTTGAAAAGAGCAAATCATCCTGGGAAACCCCTTGCCGATGTTCACTTCCAGCCAACTGCCTCTTGTCATATCATCTGAGTACAGAATCAGAGTGCTCTTTCAGGACTGGTACCTCCTCTTTGCCTGTGTCACTTCTCCAGACACCCTTTCCTGCCATTTTGCTGCTTTCTCTTTGCTCTAATTCTTCAGACGTTCAAGACTTCAATAAGCTAAAGTCAGGGCAGGGTCATTTCTGAGCCAGATTTCTAACTATAAACCTACCCTGAGGATGAGAGCCCAAAGCCTGAGTGCTTACTTGAAACAGGAAGAAAGAAAAATATAAGAGAAGAAACACATATGAAGATCTAAATAAACTATCTGGACTTAACTAACTTCCACATCTATCCACATACACAGATTATTTGCACCCTTACAGAAGCAGATGATTTCTATTAATTTACAGATTTTTAAATTCTTGATAATCATGTGCTGTGCTTAGTCGTGTCCAACTCTTTGTGACCCCATGGACTGTAGCCCACCAGACTCTTTTGTCCATGGCGATTCTCCAAGCAAGAATACTGGAGTGGGGTGCCATGCCCTCCTCCGGGGGATCTTCCCAACCCAGGTCTTCCTCATTACAGGTGGAGTCTTTACCATCTGAGCCACCAGGGAAGCCCAAGAATACTGGAGTGGGTAACCTATCCCTTCTCCAGGAGAACCTCCCTACCCAGGAATCGAATCAGGTTCTCCTCCATTGCAAGTGGATTCTTAACCAGCTGAACTACCACGGAAACTCATGATAATTTGTCCATAAGAATTTTTGAGATCTTTAGAAAAATTAGAGGCATAATTTTTTGGTATGTAAGAGCAATATGGGCCAAGAAATATTTCCATGTTTGGAGTTACAAAAATAGTACATTAAATTTGTAGGTATATAAGCAATAAGCCACATGTTAAGGATTCCTTGGTGGCTCAGATGGTAAAGAGTTTGCCTAAAATGCAGGAGACCCGAGTTCAATCCCTGGGGTCAGGAAAATTCCCTGGAGAAGGAAATGGCGACCCACTCCAGTATTCTTGCCTGGAAAAACCCATGGACAGAGGAGCCTGGGGGGCTACAGTCCATAGGGTCGCAAAGAGTCAGACACAACTAAGTGACTTCACTTCCCCTAATTAAAAAATAAAGTAATATAAACAAAATAATAAACAACCATGCCCCAGTTTAGAGTTGTGGCTCATGTATTACATTAATAGTAAGCCAAAAACTCCTGCAAGAAGAACAAACTATTTTAGCAGGCTGGAGTTTCTGCCTGGATTCAGTGAGCCTACTCTTAAAGCATTTGCTGCTCTGTGACTAAAGCAGTGTCAAAGAACAAAGATAACAGGGCCCTTATAGCTGAATTAGTTCCTGAATTTCTTTTGATTAGTTATATATATGATGTGGAATGGGCTTTCCGTGTAGCTCAGCTGGTAAAGAATCTGCCTGTAATGCAGGAGACCCCAGTTTGATTCCTGGGTCAGGAAGTTCCCCTGGAGAGGGGATAGGCTACACACTCCAGTATTTTGGGGGCTTCCCTGGTGGCTCAGATTGTAAAGAATTCCCCTGCAATGTGGAAGACCTGGGTTCAATCCCTGGTTTGGGAAGATCCCCTGGAGGAGAACATGGCAACCCACTCCAGTATTTTTGCCTGGGAAATCTCGTGGACAGAGGAGCTTGAAGGGCTGCAATTCATGGGGTTGCAAAGAGTTGAACACAATTTAGCGACTGAACATGCACACATAGAAACACACATACATACGTAATTAGGTACATGTATAATTATACAATCAGCCCTCCTTATCTATGAACTCTGAACCTACAGATACAGAGGGCATTATACTATACCATTTATACTATACATAAGGGACAGTTATATATAACTATCGGAGAAGGCAATGGCACCCGACTCCAGTACTCTTGCTTGGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGTAGTCCATGGGGTCGCTAAGACTCGGACACGACTGAGCAACTTCCCTTTCACTTTTCACTTTCGTGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGTAGCCCGGTGGGCTTCCATCCATGGGGTCGCACAGAGTGGGACATGACTGAAGCGACTTAGCAGCAGCAGCATATATAAGTATCTGTGTATGGAAGATGCAAGAGTTTGGGCTTGTGCTGTGTCGCTTCAGTCGTGTTTGGACTGTAGCCAAACCCAATGGACTGTAGCCCACCAGGCTCCTCTGTTCATGGGATCTTCCAGGCAAAAATATTGGTGTGGGTTGCCATTTCCTACTCCAGGGGATCTTTCCCACTCAGGGATCAAACCCGAGTCTGTTATGGCTCCTGCATTGGCAGGCATGTTCTTTATCACTAGCAACCTGGGAAGCTGTATCACCATCATAATACATTCTTTGTTCTTAGAACAGTGGGAGTTTCAAGGTAAATAAGAAAGGAATTTTGCTGCTCTGGAACTTTAGAAGTTGCTGTCATAAACTGTTGATATATGTCAGATAGATAGAAGCTAAATACTAAGATTAATGTTACCAATAAGTAGTTAGCTAAATATTTGTTTGGATCTTTGAATTTATTTACAGGATTGGCCCCAACATCAGTTTGTGTTAATTTTTTCTTCTGACACGTGAGCATCCTGCCAGTTTAATCTGTATCTGATTGATGACAGAAGGTCTGGGGTCCAGGGACTATGTTGATTACAACAGTTTATTCTGAAATTGCTCAGAGATGTGTGACCCAGCTTGCGTCACCCTCTTGATGTGGAGCCCAAGAAGGCAGACCCAATTGGGCCAAAGGTATTAGGTCCTCTCTCAGCCAGAAAAGCCTGGGATTCTCAGTCATACTTGAGTCTACACTTGAAATAATATGAGCCTAGACTTCCACAGGTCTAGAACAAAGACAGCCTGAGAATGGGCTGAAGCTGTCAGGGGGTTCATATCTTCAGAAGCCAAATTGTTCCTCTTAAGTTTGAGGCAAGGAGCAGGGGGTGGGAACAAATTTGTGTTATCTCAAGTTAGTTCATTTCACACTGAATTTTGGAGCAGTCATCACATTTTGGTAACCAATTAATTGCTCTTTTTTTTTTTTTTTTGGCTGTATTTTCTAG
Seq C2 exon
GAAACCTAACGAAGCATATGAAATCTAAAGCACACATGAAGAAATGCCTGGAGTTGGGAGTCTCAATGACATCAGTCGATGACACCGAAACCGAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001146:ENSBTAT00000001526:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]