GgaINT0089880 @ galGal4
Intron Retention
Gene
ENSGALG00000013795 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr3:52043037-52045886:+
Coord C1 exon
chr3:52043037-52043212
Coord A exon
chr3:52043213-52045784
Coord C2 exon
chr3:52045785-52045886
Length
2572 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
GATTCATCTCTGATCCATAGGAA
3' ss Score
7.51
Exon sequences
Seq C1 exon
GTATAAATCAAATGAGGATTATGTATATGTCAGAGGACGTGGCCGAGGAAAGTATATTTGTGAAGAATGTGGAATTCGCTGCAAAAAGCCAAGCATGCTAAAAAAACATATCCGCACTCATACTGACGTCCGGCCTTATGTATGCAAGTTGTGCAATTTTGCCTTCAAAACTAAAG
Seq A exon
GTACTTGACCCTTTTTTCTGAACTTTTGCAGCTTCACAAACAAATCTTGAGATATTTTGCCATCTGGGATCCAAGCACCCTTTGCAGTCAAGGAAAGAATTTTCTTTGAAACAAAACGACTATGTTTATGGATACAGGACTCTGTGACAGAGGTTGTCCTTTTCTCTTGAATTTATCCAGGGATACTGTGAGACTTAGAGACTCCTTGGATAGCTTCATTAACAGCTGTGGGCTTTGACCGGTCCAGCTTTCTGGAGATAAAATATAGTAGCTTAAGAACTGCCCTCACAAACAATACTTTCTGCCAAAGTTGGTACGTGGTACAAATTTTAACTGCAACAATGCTCAAATGTACTAGACAAGTACACTTATTGTGACAAAAAGTAGAAGCAGAGCATCAGCTAGTGAGGAAAACATGCCTTCACATGCTTTGCAGGAGGTCGGTTTCAAGTTTATAATTAATGTATGTCTCCCAGATGGGCCACTCCATCCACTGCAGCATTAATTATTAATAGAGATCTGATATCCTGTGTTCACATGTATTTATCAGCGCAGAAAAAAGCTTTCATTTGTCACTCGATGGCCATAGATAATGATATTCTTTGGAATTCGGATTTACCATGCAACTGTCTCCTTAAAAGAATAAAAACCCTCTTCTGTGGTAGCATTTCTTTGTAGCACAGCCCAAACAAGCCTTACATTCTCAATTTCTTAGCTTTGCTCTGACCATGAAGGGAAATTGGTTCTGATCCTATTGTACTGAATTTACTTGAGGGAGAAGAGAAGAAGCTGAAATAAATTTCTACAGAGATCCCACTGCAACTTCATGGCTGTGTTGAGGAATGAGGATTATAATAGTTTCCATGACTCCAACACTTCTTCCTCTACCAAAGACGGGCATAGCTCATGGATGGCGGTAGACCTATCAATCTAGTTGAAGATGAGAGCTTTGATGGGGGTGTAGAGACAAAGAGAAGGAGCTGCTTGTGGTAATCCCTGTGGTCTATCTGGGGAGCTGTTCTCAAATCACTATTTACATTTGACATTGCAGGAAAAATGGGTCTTCAGGAGAGACTTAAAGGGAGGATTGTGGTTTTGCAGCTCTGTTCAGAGCAGACATTCCAGGCAGAAGAGATGGCATGGAAATAAATGTGAGATTGCTTGCTGAGGCTGGCATTTCTGGCAGAGAAGAAGAAACAGGGAGGAGGTGGTGTTCTGTTGCACAAGAGAGGGATGAGTAGGAAGAAACTAAGCCTTCAAAGTGCAAGAAGTGTTTAAATTGTGTGTTGCTGCTCATGGGCTGTTGTCAGCCTCATAAGTATTGTTGCTATTTTGCTGAGGACAGTTGGGGACAGACCTTCAAAGCATTTAGCCACATAGAAGTATCAGAGGCTGAGCTGGATTTTTCATGCAGTACACAGACGCTGTAAGAAACCTACTGAGAAGGGAATTACATGAGCTACCTAGGACTGAAAATCAGAGAAAAGGAGCTTGTGGGCTTCCAAGTACACCTCTGCTATCTGAGAGAGTGATGCACTGTTCCTGCCATCTGGAGACACTGGTCAGGGTCCCAAAAGCAGCATACATACACTCACAGAGTGCTTTTCCTTGAACTAAGAAGTGCCGTGTCTGGGTTGGCACTTTCCCAGTTGTCTGTTGCAGATGTGACTAAAGTGGCTAATGGATTAGAGTGATATTCTCATTTCTCTGGCTTGTGCTTTTTGTGCCCAGGATTCTTTGCTATGGAATGTCTCCTGAGGCCATTCTCAACCCAGTTGTCTTATCTGTGAAAAAAACAGACCAAGACAGACACTTCAGAAAGTCAATAGTCTAGTGTTAGATTGCTCCCTCCTGGGAATGGGAGATCTGATTTCAAATCCCTGCTGTGTCTGGTTCAGATCCATACTCCAAAGCAGGGAGCTGAACTTGGATTTACCACATCCCAGGTGAGTGCTCTGAGTACAGCTCCTCTCTGGTCAGAGATTGCAGTCAGACAGTAAACTTGCACTGAGAAATCAGGCATAAGTGTCTTTTTGTGGGATAGTGCTGGTTCAGCAGATGCATTCAGGGCACTAAATGTTTGGAGCTCACATGTGAAATAAGTGGGAGAGTGCTTAGCTTGAGAGTGCCACTGTGAAACTCTGACTGAACCCTGAACGATGGTGCACTGGTGTTCTGTCAGTGTCCAGGCAATAAATAGTTATCACAGACACTAAGCCCAGGGATAAATAACTGCCAAGCGTGAGTTTTTGAGTTTGCTGGCATACCTAAATGCCATATGGAAAAGTGGAGAGGTTCCTATATACCTCTCAGGTCTGAGTGTATTTGTTTATATATATATATATACATATATATATATATTTTTTTTTTAAGATATAAAAGCCCATTCTCATTAAAACAGGCTCTGGGCAATGGGCCAGATGAGTTCAGCCATGTCTGTTTCATTGTTGTTGTTGTTTGTTTTTAAATTGAAAACAGGATATCTGCAGGATAACTGAGTTATACACCAAAACCTCACTTTGAAAGTGATCTTTGCTGTTGTCAGTTAATTAGATTCATCTCTGATCCATAG
Seq C2 exon
GAAATCTGACAAAACATATGAAGTCTAAAGCACACATGAAAAAATGCCTGGAGCTTGGAGTATCAATGACATCTGTAGACGATGCTGAAACTGAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013795:ENSGALT00000022399:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]