HsaINT0076327 @ hg19
Intron Retention
Gene
ENSG00000010818 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:4921]
Coordinates
chr6:143082601-143086111:-
Coord C1 exon
chr6:143085936-143086111
Coord A exon
chr6:143082703-143085935
Coord C2 exon
chr6:143082601-143082702
Length
3233 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TTTTTTGCTACATTTTCAAGGAA
3' ss Score
7.09
Exon sequences
Seq C1 exon
GTACAAATCGAATGAAGATTATGTATATGTCAGAGGACGTGGCCGGGGAAAGTACATTTGTGAAGAATGTGGGATTCGCTGTAAGAAGCCAAGCATGCTCAAAAAACACATCCGTACCCATACTGATGTTCGGCCTTATGTATGCAAGTTATGTAACTTTGCCTTCAAAACGAAAG
Seq A exon
GTACAAGTCTGATTTTTTTGAGAGGAAAAATACTTCTCTATGGCTACTTAGATTTCTGAGTGCTATTTTATAACTAACCTTCATCAACAATAAAGATAGTTTGTTTGTGAAAATATGATTCCACGAAATATATTTTCTCCCTCAAGTAAGTGATCAAAGGATGTATGTGAGACTGTGAGGCTCCTTTTATGACTTAATTAAGAGCAGTAGACATAGGTCCAGGCCAGTTGTCTCCAAAGGAAGTGGCTACAAATTGTCTGGATAGCTATTACTTCATGTTGGAAATGTTATGTGGTCTAGATAATATTTACACCAGTATTGAAATCCTGCACATGCAGTGGTATTAGAGAAGCAAGGCAGCAGCTGGGAAGAAAACATGTGCTCTTGGTCAGTTTCAAGATTATAAATAATGTAGAGACCCACACACTCCCAGGTGGGTGCCTTCATCCACAGTTGCATTAATTATGCATAGAAATTTGATAGCTTGTGTTCCCTGTTTTTATCAGCACAGAGACAATTTCTGATTCTCAGTACATAACTGTTAGTCTTATAAAACTAGGACTTGCCTTAAAATTTTTTTTTAAAATCTGTTTTTAACAGGTAGATTTATGTAAAAATATTTTACTCAAGGAAGTTGCTTCGGTTATATTTTTATTTTTTATAATATTATGAAAATGTTCATAAGTCTGGTAGTCTCAGAATACAAACAGTAGTGAATTAGAGGTTGTTCGACTTTTGCAGAAGTGTGTTTTACCTTAGGTTTAGTGGATACTATAGGCACCCCCTCAACACTTTAAATTTTCATATTGATTAATCTGCTCATTCAAGAAAAAGAAATACCAAGTAAAATTATCTTTGGTAGAGAAATGTATACCTATATTCTTTTATAGCTGAAAATCCTAAATTGCTAGAAGTGTAAATGGGTAGCCTCTCAACATATCTGTTTCTCTTTTATTAAAAAGATCTATGTAATAGAATTGCCTCATTTGAAGCTGAAAAAAGTATGTGTTCATTTGTGTCTCAAAAAATAATCATATGGCCTTTTAAATACCACTCACCTCTGCACAATCAAGCCTTTTATACAGAACTTTACTAAGAGATTCCCTAGGAGATAAGAAAATAAAAACTTTGGTTTCAGGGAATATTGCAATTCAATAGTCATTACGAATGATACATATCTTCACTGGGCATATGAGTTTGCTGCAGGTATAGTTGTGTGAAAAACTGGATGAAGAAATGACACATCTCTAGATATTTTTAAAAATCAAATTAAGTCTGCCTCTGAATCATCATCTCCTGAAGGAAATAATTTATTCTTGGTCATTATTGGAGTTTCCTTGTCACCCTTTGGGAATGTGCAAATGTCTCAGAATCTTAAAATGAGCAAAACATCCTGGGAAACCCTGCCAGTTTTCACCTCCGACTGAAATGCCTGTTGTCCAAACCCACATTGTCGTCTGAGCACAGATGGAACGCCCTTGCATGACCAATCCCTTCTCCTTGTCTGTGCCACTTCTTCAGGGGCCTCCCCCGCCACTCTCCTTCCCTCTCCTTGTCCTTATACATTACTTCTGCAGCTCATGACTTTAACAAACTAAAGCCATGGTAGAATTGTTTCAGATCCAGATTTCTAGCTACAGACCTATTCTGAAGATGGGAGTCTAAAGCCTGACTATCCTTGGAATGGAGAGAAAAATGTAGGAGAAAGAAACACATACTAAAATCTAAATAAACTATCCCGATATGCTTAGCATCTATACCTATACACATCCATAGCGTACTTGCACTCTGGCACAAGTGATGATTTTTATTAATTTGTAGATACATTTCATTAATTTTCTAGATTTAAGCATTCTTGATATGTCTATAACATTTTTGGGCTCTTTAAAAAATGGTAGATATAAGTTTTGATAAATAGGAGGAGTGGGGGCCTGGAAATATTTCTGTTTGGAATTATTCAAAACAGCATGTAAAATTTATAAGTATATAAGCAATAAGTAAATAATAAAGCAATATGAGTAAAATAATAAACAACAGTGTCCCAGTTTTAACTGTGGCTCATATATTACATGAACAGCAAGCTGAACACCCCTACCAGAGGAATAAACTGTGCTAGCAGGCTGAGTTTCCACGGAGATTTCACAGAGCCTTCTCTTAAAGTATTTGTTGGTACATTGCTAAAGCGTTGTCAAGGGCACAGATAACATTATGGCTATTTTCACTGAAGTGATGTAAAGGCGCCTTACAACTGAATTAGTTCCTGAATCTCTTTTGATAAGTTATATGGCATATAATTTATATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATTCTTCTGTAGATCCTGGGTCAACGAGGATTGGAACAATGTTTTCAAAATTTCTCACATTTCATAAAGCAGTTATACAAATTATATATATAATTTATATCCACACATGTATATACACATATAATTGTATATGCCATTATCATTATAACATATTCAGCATGAAACCTTTCTTTTTTGTTAGTGTGATAGGAGCCTGAAGATAAGTAAAGAGGGAATGTTGCTGCTCCAGAATTTTAGGAATTGCTGTCATAACTTTTGCTAACATATGCCAGACAGATAGATGCTAAATACTGGGAATAATGCTCCCTATGAGTAGTTAGCTAATTATTTGTATGGATCTTTCAGAGCACTGACAAGGTTGGCCCTCACATTAGTTTGTATGTATTTTTCTTCTGAATGGTGAAGATCCTTGGAGGTTACTCTGTACCTGATCAGTCACAGAAGGTCAGGGGCCCAGTGGGTGTGTTGAGAATATTTCATTCTGAAGTATCTCTGAGGTGTGTGGCCAGATTGCGTTTCCTGTTTCTGTGGAGTCCCAGGAGGCTGGTGTATTTGGGTAGATATGAGGTCCCTTCTCAGGCAGAAAAGCCTGGGATTTCTAGTCTTGCTTTGAGCCTACTCTTGAAAAGATGTGAGCCTGGACTTCCACATATCTTCTAGAATAAAGAATATCTGAGATTGGGCCAAAGCTCTCAGGGATTGATATCTTCAAAGACCAGATTATTCTTCTTAAGGTTGAAACAAGGGGTAGTGGGTAGAAACAAATCTGTGTTACATGATGAATTTAATAAAATTAGTTCATTTCACATTGAATTTGGAGCAGCTATCAGCAGTTATTAATTTGATAACCAATTAATTTCTCTCTTTTTTTTGCTACATTTTCAAG
Seq C2 exon
GAAACCTAACGAAGCATATGAAATCTAAAGCACACATGAAAAAATGCCTGGAATTGGGAGTCTCAATGACATCGGTGGATGATACAGAAACTGAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010818-HIVEP2:NM_006734:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)