BtaINT0072294 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012380 | HK1
Description
Bos taurus hexokinase 1 (HK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001012668]
Coordinates
chr28:25911789-25916947:+
Coord C1 exon
chr28:25911789-25911888
Coord A exon
chr28:25911889-25916763
Coord C2 exon
chr28:25916764-25916947
Length
4875 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
CCCCACTTTATGTATTTCAGGGA
3' ss Score
8.63
Exon sequences
Seq C1 exon
GAATTTGACCTGGATGTGGTGGCTGTGGTCAACGACACGGTGGGCACCATGATGACCTGTGCTTATGAGGAGCCCACCTGCGAGGTTGGACTCATCGTAG
Seq A exon
GTGGGTGTCCTAGAAGGTCTTTTTCCGTGGCAGGGAAGGCTGGGTTTTCCTGTTTTGTGGGGCCCTGAGTCAGCATCTCAGTGCTCGATGGGAGACATCGTACATCTGTCAGCACTGTCCCTTTACACTGCCAGAGTTGCATTGTGGACTGAGGCTGCAGGGCTCTCCAGAGGTTTCCCCTCCTAACACCCACCCCAGGAGGCTGTGCACTGACCATGAGCAGATTGTCAGAAACTGAACTTTCCGGGAGTGAGGCTCCTGGTAGCTCTCATGGGCCCAGTGGACAGGGTGGGAGGGCCTGGAGCTGACCTACTCAGCAGGGCAACTCAAGAGGGCTTGTATGGAGGGACTTGGGCAGGTGTTGCAGGGCCAGGTCTGTGGCTGGGAAGGAAGCAGAGCCTGCCCTTTTGCTGACTGTAGAGAAGGGCCAGAGGGCAGTCTGGATGCCATTTGGCCTTCAGCAGCAGTGGCCCACCAGCTGCTGAAGAGAGAGGCATGTTACTGAGCCAACCTAGGTCTACTCGCCCAGTAAAGCCAATCTACTGACACTGGGATATGGTGAAGGGAAAACCACTTTTTTTTTTTGGATAGAAAAAGAGGTAGTTTATTAGCATAGGATAAAAGTACAGCATTTATTGTAAGGCACCATACAAGGAATCCAGGACAGTCAGTGCTCAAAAAGTCTGAACTCCCCAGTTGGTTTCAGCAAAGTCATTTTAAAGGGCTTCCCTGGTAGCTCAGACGGTAAAGAACCCACCTGCATTTCAGGAGACTGGGGTTTGATCTCTGGGTTGGGAAGATCCTCTGAAGGACAACCCACTCCAGGATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTACAGTTCATGGGGTCCCAAAGAAGGCCAGGTGAGGGAGGGAGTCCCAGAATGTGATCATCTCATGCACAATTCTCTGACTGGTTGATGGTGAGACAGCAGGGTGGTGTCACAGGGGTTAACATTATCAGTCCTTAGGCTCCACCAGGCCTGTGGGCTGTGTGCCCAAGGTCAGCAAGAAGCTAGTATCTTCCATTTGGTGGGGGTTTTGGCATCTGTAAAACAACTCAGGAAATGTTCTTCGGATGTATTATCTAGGCACTTCAGAGAGGAGCTAAAGCAGACTGTGGGAGAAGGGTCTGTCCAGGGAAGGCCCCATAGGTTCCTGCTTGGTTATAGGCAGAAGGATTATCTTTTGGCTTTTCAGGCTTTTCCTTTATAATCCAAGTAGGGGTCTGGGCCTTCAGAGCACAAAATTCCAGAAGCATCTTGATTTAGGTTGCAAGAAAACCATTTGTTTAATTGATCCTGCTCCTAGTCTCAGGAATGCTAAGAAAATGCCTGGTTTCTTAGTCAACACCTGCAGACCTCCCTGGGCAGAGAGGGTTAGCACCCTGCTGCGTAGACCTGGGCGATTGGGAGAAGGCCCCAGCAGGCTGCCTTCCTGGTGCCAGGAAGACCTTTTCCTTTATTAATCCACTTTTGGCTTCAGTGGAGATTTAAAAGACTGAGGAGCAGCTCCAGGGGAAGGTTGGTTGAGGCCTGACTTTGGGGCGCTTTGTTTCTTTCTTTCTTTTGCAAAGCTTGCTTTCTCCTCCTGGTCCCTTCCCCTTTCTGCTTATGAATGGCCTTAGGTGTGAAATGCAAAGCTAGAGTGACTCAGCACTTTCTCTGCTTCCGGCCTGACTGAGTAAGACCCACAGATGTAGGGACAGGGGTGTGGGGGAGGTGTAGGAGGGGTTCTGCTGCCTTCAAAGTCACTCTTTGCCATCAGTTGATCTCAGCACAGAACTCGCCCAGCAAGTTTGCATATTTCATTTTTTTTTTTGTACCCCTTCCATTTCTGGGCCTCTTCTCTCAATTTTACACTCTAGGTGAAAGAGAACTGAGAAAGCAAAAGTAATCCAGTGATGTTAATCCAAAACTGGGCTGGCTTCTTGGTGGGCATTGAGCCCAAAGACACAGCCAAACCAAAGATCAGAAGGAGAACATTGGGGATCTTTCCCAAAGCAGTGTTGGGGAAGTTTTAAGCTAAGGGTACTTGCATATGCATGAAATACCTTGGGCTTGGTCGGAGGAGAATTCAGTATAGAGTTGGGGCAAAAGTTGACAGTCCAGGTTTAATTTGATTTAAGTCACAAGGGTCAGAAAGGTCAACATCATCATCCCTTCAGTCAGTTCAGTTGCTTAGTCGTGTCCGACTCTTTGCGACCCCTTGGACTGCAGCACACCAGGCTTCCCTGTCCTTCATTATCTCTCTCGGAGATTGCTCAAACTCATGTCTATCGAGTCAGGGATGCCATCCAGCCATCTCACGCTTTGCTGTCCCCTTCTCCTCCTGCCTTCAATCTTTCTCAGCATCAGGATCAGTTCTTTGCATGAGTCAGTTCTTTGCATCAAGTGGCCAAAGTACTGGAGCTTCAGCTTCAGCATCAGTCCCTCCAATGAATACTCAGGACTGATTTCCTTTAGGATTGACTGGTTTGATCTTCCTGCAGTCCCAGGGACTCTCAAAAGTCTTCTGCAACACCACAGTTCAAACGCATTAATTCTTTGGCGCTCAGCTTTCTTTATGATCCAATTCTCACATCCATACATGACGATCTGGCAGTTGAGTGCCTGAGCAGGGTTTAAAGTCTGCAAAACAGCTCAGGAAAGTGCTTCAGGCTAATCTTTAACATGAAACAGAACTAGGAATCTTTACAACTGATTTATTATTTTTGCTATTATTACTTCTCTTGCCTGATAATAGTTTATTCTTTTGTCCCTTAAGATCATTATTATTGAGATTTGTTGAAGAGCAAGAATTGTGGCCAAACTTAGATCACAAAATGCATTAGGCCAAAATGGCTTCACTAATGTCAAGAAAGTCATGCCTGTTTATCTTTCTCCAGGGACCCCCTACCCTATCTGCTTATAGTTATACAGTCAGAAGCATCTGCAAATTCTACTTAAGTTTCTTTAAAGGGCATAAAACAACCTGAGCCCACTTGTCTAGTTGGTAGGGGTGTCTTTGTGTCCCTTAATGATGTTGAAAATCCATCTACTGTGCATCCCACCCAGGGTGGGTCCATGGTGCTCTAGGGCCTTGTGAATCTCACGTGTGGTCCATGGACCAGCAACATCAGCATCATCTGAGAGCGTATTAGAAATGCAGGGTCTTGGGACTCACCCTTCACCTCCTGAATCAGGAAATCCATCTTAACAACTCCTCAGGGGATTCAGGTATATAGAAAAATATCTGTGTGAGGGACTCCTTGTTTGGTTGATTGGTTTTTAAATTTCCCGTCCATTCACCGAGACAAAGCCAACAACCACAAGTTTGATATCTGGCAATTAAAACTGTTATGAAAGTTTTAGAACACTTCCTCCCAACATCTGTACCTAAATCCTCCTGGATGAGAACAGCAAACAGTTTGGGTTCCAACCCTAGTCCTTAAGGGGCCACACTCCGAGTAGCCCTGTCCTGGGAGATCACGGATGGAAATCAGAGGCTCCTGACCCCCTGGAAGCCATTTGTCAGACTATGTGTATACAGTGTGTGGGTGCACCTGGGGAAATGGCCCTTTTCTCAGGAGTGTGTGTATGCTAAGTTGATTCAGTTGTGTCCGACTCTTTGCCAGGCTCCTCTGTTGGATTCTCCAGGCAAGAATACTGGAATGGGTTGCCATTTCCTCCTCCAGGAGATCTTCCTGACCCAGAGATCAAACCCATATCTTTGACGTCTCCTGCACTGACAGGAGGGTTCTTTACCACTAGTGCTACCAGTTCCCAGGCCAGGGATCGAACCCCGGCCCCCTGCATTGGGAGCACACAGTCTTAGCCCCTGGACCACCAGGGAAGCTCCTTTCTCAGGAGAATCATCAGAATTTCAGAGATCTGTGATACCAAAATGGTGAGGAACCATTGCTTTAGAAATGTACCCTGGACATGCTCAGGACGCTGTCCTTCGGTGAACTAACCACAGGCCTCATTGTAGAACACGCAGGAGAGTTTATTCAGGCAGAGTCCATGACCAAGTTTGATAAGATATATGGACATAAGTGGCTGGATAGTAGACAACACCTCCATGTATTAATAGTATTTTATATATGCATGCGTGCTAAGTCGCTTCAGTTGTGTCCTACTCTTTGCGACCCCATGGACTATTGCCTGCCAGGCTTCTCTGCCCAAGGAATTCTCCGGGCAAGAATGTTGGAGTGGATTGCCATGCCCTCCTCCAGGGGATCTTCCTGACTGATCTCCTGCTTTGGCACGCAGGCTCTTTACCCACTGGGAAGCCCATTTATATATATATATACACATATGTGTGTGTGTGTCTGTGTATCTGTGGCCAGTGTGTTGGGGGGGGTGGGGGAAGAGAGATGGAGAAATACCCTTTCAATCTGAATGCTGCATAAACCTCCACCACTTTTAAGATGCATCCCTTTGCTCTAACACCATCTTGTATTAAAGTAAGCATAGCCCTGCTTGGTGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTGGGGTGCCATCTATGGGGTTGGACAGGGTAGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCCCTGCTTGGACAGGTGAACATATGAGGCTCTTAGTATTGGTGCCTTTGTATAAAGTGAGTTAATCAAATGCTCTGGGCAGTTTTCACTCTAACTTTCCCATTATAGTTTGAGATTTTCCTGGAAGACATTGGGAAAGTGAATGTTCATCTCAGAAGCGTGCCCCAGTGGAGCGCCAGGCCTGGTTGCAATCCCCCTCCCCACTAAGGGCCATTCATTCCCCACTTTATGTATTTCAG
Seq C2 exon
GGACTGGCAGCAATGCCTGCTACATGGAGGAAATGAAAAACGTCGAGACGCTAGAAGGAAACCAGGGACAAATGTGTATCAACATGGAGTGGGGTGCCTTTGGGGACAACGGGTGTCTGGATGATATCAGAACAATCTATGACAAACTGGTGGATGAGTTTTCTCTAAACTCTGGGAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012380:ENSBTAT00000016432:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]