RnoINT0070948 @ rn6
Intron Retention
Gene
ENSRNOG00000046891 | Hk1
Description
hexokinase 1 [Source:RGD Symbol;Acc:2796]
Coordinates
chr20:31917792-31922975:-
Coord C1 exon
chr20:31922876-31922975
Coord A exon
chr20:31917976-31922875
Coord C2 exon
chr20:31917792-31917975
Length
4900 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CCTCTTCCCTGGTGTTTTAGGGA
3' ss Score
10.43
Exon sequences
Seq C1 exon
GAATTTGACTTGGATGTGGTGGCTGTGGTCAACGACACCGTGGGCACCATGATGACCTGTGCGTATGAAGAACCCACTTGCGAAATTGGACTCATCGTGG
Seq A exon
GTAAGTGCCGTCAAAGGGTCTCTTCTCTAGGAAGGGGACACTGGCGTTTACTCGTTTTTAGAAACCCAGCAGCTCAGTCCTTAGTGGGGAAATGGTTGATCCGTGGGTACCATTTTTACCCCCTCTAGCACTCTGTATGGAGGCAAGCTGCACCCCATGATGGCTGCACATCCATTAGGATTGGACCGTCCGTCAGTGAGCTCTCCAGGAACGAGGCACAAAAAAGCTCATGTGTTCTGGGTAGATGGAGTGGGGTGGCTGAAACCAGACCATGTGCAGACTCAAGGGCTAAAAAGGAAGTAGAGACCATCTCCACTCCTGACCATGTTGTAGCTAGCTGGGAAGGGCCAGTCTGCTCTGGGGCACCATTCATGGTCTGTAGCCACCGTCTAAGTGACCCCAGCCCTGTAGGTTGTTTTCTTGTGTTCCAAACATATTAGAGGTCTAGACCTCAAGAGGATTAAACCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGCGCGCGCGCGTGCACACGCGCGCACTCATGCGCTCATGTGATGTATGTACAGTGTGCGTGCAGGAGTGCATGTGCCACACAGTGCCTATGGAGGTCCAAGAACCACCTTAGATATTGGTCCTCACTGCCACCTGCTGATATAATAAAATAACCTAACAGAAAAAACCTAGGGGAAAAAGGATTTATTTTAGCCCTCAACTCCAGGTTACAAATAGGCAAGAACCTGAAACAACTAGTCATATTGTAGCCATAGTCAAGAGTAGAAAGAAATGAATGTACAGACTCACTTGTTTGTGCTCAGCTTGATTTTCCCCCTTATCCTGGTCAGGACCATCTCCTAGGGGATGGTGCTGCCCACAGTGGGCTAGGATTTCAACTAACATAAGATTCTCCTTCTACCCAATGCAGACAGCCCCTCCTCTTCCCAGGTGATTCTAGGCAGTGTCAAGTTGACAGTTAAAGTTAACCATTGCACTCCCTAAACACTTTCTCAGTCACTTCTTGGACACCTTGAGATCATTTTTTAGCGTCTGAAGGTTGGGATGGGCCTCACGCAGGCTGCATGGGGGAAGCTTTTCTATGTGTTATGAAGCCACTTGTAACCACCAATGAAACAGAAAATCAGGAAGCACAGCCTGATAAAAGGAATTCAGCTCCTGCCCCTGAGATTTCATTCCTTTCTTCCTTTTGGCAAAGCGGCCTCCACCCTGCCCTGCCCGGCCCTGTCTTTTGCCCATGTAAAGCTTAGGCGGGGTTTAGGTGAGACCTGCAGACCCAGCATGACTGGGCATATTCTCATTGAGGCCGGCCTCACCTTCCTTGCTCCAGAGAGGAGCTGCTGCCAGGATTCAGCCAACTTTCCCTTGCCTCTGTCAACCAACCTCTTGGTTCAGAATTCTCATGGCCAGGGAATACAGTTTGCGTATTTCGGCTTTCTTTGCATCTCTGTTTCCCATGGCTCCTTTTCTTTTCCCCCTCCTCTTTTGTACTTTGGGTAGAAGGGAACCGAGAAACCAAAAAGAATCCAGCAGTGGTAAGGGTAGGATGGGGAGCCTTACCCTTGAATTGAGGGAAAGCTTGCTCAGCTCACGCCTGCAAGCTTTATGGCGAGTGCAGTTGATAGGAAGCAACATCTCTGGGAGCCTCACTACAGACCCCCTTGAGTCATGGAGTGCTAATGGGAACGTGGCCGCTCCGGGGTATGGCTGCAGAGAAGGCCTTTATTGTAGGGATGAGGGAGAGTTCAGCCAGAGGCATCTGGAAGAGGCCAGACTGAACAGGGCTAGCAGAATAGAGACTGGGCCAGGAGAGGTGGAGGGGGGTCAGGGGAGAGCAGGAGAGGGAGAGAGGCCGAGGGAGGGAGGGTTGGAGTGGTGGGGGGGAGAAGAACACTCAATGGACGAGATGGCTGAGTTATATAAGAGAAAAGCTGGGGGAGTTATGGTTAGGGGGCGGGGTGAGAAGTGTGGGAGGAGCCACAGGTACTGGGTGAGACTTGTCCTGGGTTCTTTGAGACTTAGCAAAGATCTTCATAAATACAGGCTTCAGGGCATCTGTGGGAAGAGTTTTCAGTCTCCGCAGTAAGAGAAGTCCAGGGACCACAAGCCAGAGGTCATGGTGTTAAAACTACTGTACAGCAGGCTAGCAGCGGGGGTCTCAGCGGACTGAGGGCAGGCTAGCAGCGGGGGTCTCAGTGGACTGAGGGCAGGCTAGCAGGGTGGGGGTGTCTCAGTGGACTGAGGGCAGACTAGCAGCGGGGGGGGGGTGGTCTCAGTGGCTAAAGGCACCTGTTGCCAAGCCTCATAGCCTGAGCCCAATCCCCAGGTTCACGCTGCAGTAGAGCGAGAGAACTGAACTCCCCTGCAAGGTGAATTCTGATTCCATATCCGTGCAGGCTCATACATGTGTGTACACTCACAGTTTCAAAATAAAGTAACTAAAAAATAGTGAAAATAATGTGCCTCCCATTTCGGGTCCATAGCCCCTTGTAGGCTAAAACTGCACCAACTTGTGCTCCTTCCCAGTCTTGGGGGATACTGAGTAAGATACACTCTAGGGAGGTCAAACGCGGACACCAGAAGCTTCCCGGAAACCACACACCCACCCAGAGGAACTCTCCTTGTCCTAGAAGCAGCAGATACTCTATGGTGTCTGTGCGCTGTTTGGTTTTATGTTTTATGTCAATTTGACCCAAGCCAGAGGCATCAGAGGACTGAACCTCAACTGAGGAGATGCCTCTGTAAGATGAGGCTGTAGGCAAGCCTGTGAGGTATTCTCCTAAGTAGTGATTGATGGGGGAGGGTTCGTCCCGTGGTGGATGGGGCCGTCCCTGGGCTGGTGGTCCTGGGTTCTATAAAAATGCAGGCTGAGCAAGCCATGGGGAGCAAGCCAGTAAGCAGCACCCACTCCTCCATGGCCTCTGCATCAGCTCCTGCCTCCAGGTTCCTGTCCTGCTTTGAGTTCCTGTCCTGACTTCCTTTGGTGATATTTAAGCGTAAGCCAAGTAAACCCTTTCCTCCCCACGTTGTTTTGGCGGTGGTGTTTCAGCACAGCAATGGTAACTGTAACTAGACAGTCTGTGGTACCAGCAAGGCAAGGAGCTGTTGCTTAGAAAGGTGGGATGTGGCCCCGCACTCAGATGCTCGCTGACTAGATGTAGTCACCACAAGTGTACGGGCAAGGTATGAAAGTAGCCATCCTCTGGTTACTGTGTTTTGTTGTGTGTGTGTGTGTGTGCGCGGCGCGCACAGTACCTCCTGTGTTGTAAAAGCATATACCAACATAAATGCAGCACTGTCTGAACCGGCTGACAGGTTAGACTTTAGGCAAAATGTAAATTAATCAACAGTTGGGCCTCAGGGTCGGCCCCACCCACCACGGGCTGGACCCTCCCCAATCAATCATTACTTGAGGATTGCCATAAGTTCAAGGCCAGCCTTAGTCAACATAGTAAGTGCGCTGGCCAGCTAGGGTTACATAGAAGACCATGGGTTTTGTTTGTTCCTTTGTTTGTTTTAAAGATGATCACTCCATCCCTCTTTATAGTTTACCTCAGACTTGCCATTTAAGTTTCCCTAGAAGCAATGAGAAGACAAAATGTTTTGTTGATTTTCAAGAAATAGACCCAGCTGGATTGTAGTAGCCCATGCCTTAATCCCAGCACCTGGGAGGCAGAGGCGGGTGAGATCTCTATGAGTTCCAGTCCAGCCTGGTCTACCAGATCACGTTCTAGGACAGCCAAGGCTAAACAAACAAAAACAAACAACAACAACAAAAACCATCCAAAACTATAGGGCTGGAGAGATGGCTCAGTGGTTGTGAGCATTGGCTGCCCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGCAGCTCACAACTGTAACTAAAATTCCAGGGAATCTGACCCGCTTACCCAGACGTAGTGCAAACACCAAATGTACATTTGAGAGAGAGAGGGAGAGGAAAAGAGTGAGAGAGAGAGAAAGAGAGAGAAATATATGTTGAGTAATGATGGTGCACACCTTTAATCCCGGCGCCCTGCCCAGAGGCAGCGGCAGCAGATCTCTGAGTTTGAGGCCAGAGCGAGTTCCAGTACAGCTAAAACTACATAGAGAAACCCTGTCTCAAAAACCAAGCATATATACATATACACACAGATATATGTATTTATGTATGTATATACCTCACACATACACACACTGGTGAGGACTGGGGATGTAGTTCAGTTGGTAGAATGCAGTCCCTTCCTGCCAGGGGTCAAGGATCATTGTAGAAGGGGTGGGGGAGGCGGGGCAAGAGATTATAAGAGCCAGAGGTGGTCTAGAAAAAGCCTTTTGTACATATGACAGGGCAGTTGCACACATGAAATTGGAGGCTCTGACTGCAGGCAGATCCTGTGCAAGATCAAGGAGGACAAATCCCAGCGTAGATCAGGAGAGGGTCACGATCCCACCCCTAGCTGAGGAGTTAGCAGCCCCTGACAGCTGCTGCGGGAAAGAGAGTCAGTTTTTCCGTTCTCTTTGGAGATGGGGACCCCGAGAACCTCCCTGTGCCCCAGACCAGGTCCTAACCCACACGCAGGCAGCATTAGTTGCGCTCAGTGGGTATTTTTAGAGGGAGTCACATAGACTTGAGTGGGGAAAAATGGTAGAGGATAGGGAAAGGGCTGGAGGGGAGGGGGTGTATTTAGTCCGAATCTGTGTGCCTATGACCATTTAAAAGTCGTAATCAACCTTGCCCTGCATCAGAGCTCTGGGTGTGAAGTGTCTGGTGTGAAGTCCCCTCTCCTGTCATGTGAGGGCCGGCCCGGTGTGAAACACCCCCGCCCCGCCCCCACGGCGACCCCCACGCCAGCCCCACCGCTGTCCTCTTCCCTGGTGTTTTAG
Seq C2 exon
GGACGGGCACCAATGCCTGCTACATGGAGGAGATGAAGAATGTGGAGATGGTGGAGGGGAACCAGGGCCAGATGTGCATCAACATGGAGTGGGGCGCCTTCGGTGACAATGGGTGTCTGGATGACATCAGAACAGACTTTGACAAAGTGGTGGACGAATATTCTCTAAACTCTGGGAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046891:ENSRNOT00000072429:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(11.3=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]