BtaINT0072313 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013108 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]
Coordinates
chr11:9725604-9727121:-
Coord C1 exon
chr11:9726966-9727121
Coord A exon
chr11:9725838-9726965
Coord C2 exon
chr11:9725604-9725837
Length
1128 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GCTGTCTCCTCTTGCCCCAGTGA
3' ss Score
7.38
Exon sequences
Seq C1 exon
GTTTGAGAAAATGATCAGCGGCATGTACCTGGGCGAGATTGTTCGTAACATCCTCATCGATTTCACCAAGCGTGGGCTGCTCTTCCGTGGCCGCATCTCAGAGCGGCTCAAGACAAGGGGAATCTTTGAAACCAAGTTCCTGTCTCAGATTGAGAG
Seq A exon
GTGAGAATTTAGGGCCTGGAGTAGGCCATGTGTCCTTTTCATGGACAGACAAGCTGGGATTTTCACAGTTCAGGTACGATCAGGGTGTGGCTTACATAAAGGTCAGTTTAGTAGCTAACGTGTTTGTCTCTATATAGTGCTGTTTTAAAGTACTTTATGAACAATTGGCATTTTAAGGGAAAATATATGATATTCTCGTGAAAAATCATGCTGACCTGGATGAACCTGTGCAAAGCAGTATTGCTGGTTCTACACTAATTTCAAAGGTAGAAAGAAAGATAGCTGCTCACAGAATGTAAATGGGAATGCACAGCGGAAGATAACTCACCGAAGCCCCCTGTGCTTGGCAAGAAGGACCTTCGTAACCACTGGCTGCAGTAATAGGCAACCAGGATCAAGTGGCACCCTGTGGTGGCTCATTAAAGCGAGGCCTTCTTCCCCAGTTTAATGGTAGAGAAGAGAAGTCTGCTCTAAATTAGAATGCTGAGTTTCAGAGCCTTCTGGGAATTAATGCTGTCATTAATATTACTCTCAGGCATATTGAAAAACAGGAACTAGACAGCCTACATGAGGGAGCCCTAAGTTATCTGCACCAGTAAACAGAATACTGTTCCAGTTTACATGTCTATTTTCTTCTTCTATATATAGAGCACAGGTAGATTCAGACCACCCAGAGTGGGGGAGGAGAAGTAGAAGAGGCATCTAATGTTGTTGTTGAGGCTCATCCTGCTGGGCTGTGGACAATGAGAGATTGGACAGGAAAGGGCTTTGCAACTGAAAACTGTCATATATTAGCATCATCACTGTCTTTGCTATTTCCAAATAAGTGGAATCATGGCCAGTCCTTTTGAGTATCAGTTTTGTAGCAGCAGATACACTTGCCTAGATAAAGTGGCATGGGGAGCTGTTTCTTTGTGTCCCTGTCCATGTGGGCCGGTGTGATAAGCACTAGTTCCTGAATTGAGTTTAAAAATGGAACCACCTCTCACGGATGGTAGCTTTTACCCCCAGCCCTTGGAAGTCCAGGTCCCCCAGAACTGCTTCTGATGAAGGAGCCAGGCTCTGGAGTGGCAAGCCATCAGGCCCTCTGGGACGTCACTGACCACTGGCTGTCTCCTCTTGCCCCAG
Seq C2 exon
TGACTGCCTGGCCCTGCTGCAGGTCCGTGCCATCCTCCACCACTTAGGGCTCGAGAGCACGTGTGATGACAGCATCATCGTCAAGGAGGTGTGCACCGTGGTGGCTCGACGGGCAGCCCAGCTCTGTGGTGCAGGCATGGCCGCTGTAGTGGACAAAATACGAGAAAACCGTGGGCTGGACACCCTCAAAGTGACCGTGGGTGTGGACGGGACCCTCTACAAGCTACATCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013108:ENSBTAT00000060994:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTGGGCGAGATTGTTCG
R:
TAGCTTGTAGAGGGTCCCGTC
Band lengths:
358-1486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development