MmuINT0077989 @ mm9
Intron Retention
Gene
ENSMUSG00000000628 | Hk2
Description
hexokinase 2 [Source:MGI Symbol;Acc:MGI:1315197]
Coordinates
chr6:82678706-82679694:-
Coord C1 exon
chr6:82679539-82679694
Coord A exon
chr6:82678940-82679538
Coord C2 exon
chr6:82678706-82678939
Length
599 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
ACTGTCCATCTCCCACGCAGTGA
3' ss Score
7.63
Exon sequences
Seq C1 exon
GTTTGAGAAGATGATCAGCGGCATGTACTTGGGCGAGATTGTGCGCAACATCCTGATCGATTTCACAAAGCGGGGGCTGCTCTTCCGTGGCCGCATCTCAGAGCGCCTCAAGACAAGGGGAATCTTCGAAACTAAGTTCCTGTCTCAGATCGAGAG
Seq A exon
GTAAGGATGAGAGGCTTGGGAGGGAGGTGAGCCATGGCCTTTATTCTTCTATAATGAGTAGGCAAGCTGAAGGGTTTCTGCAGCTCCTCTGAAGCCAGGATGCAGATGCAGGTCTGTCCCTAGTGAGTGACCCATTCCTAACTGACACTCCCCAAAGACCCACTCTGAGGATGGGGGTGGTCTCCATGTAGGATGTGGATTGTCTTTTGTTTTCAGTATAGTTTGGTGTTGGCTTTCTTGAGGCGGGTCTCACTGTGTAGCTAACTAAGGTTGCCCTTGAATTGGTTGCAATCTTCCTGCTTGAGGCTCCTGACAGCTGAGATTACAGAGTGACTGACTCACCATGCCTGTGAGCCTCAGCCTGTAGTAACAATGCCCTACCTCGGATGTAAAATTGAATGAAGGGCCGCTTGTTTGTAGCTCAGTAGGAAGTAGTTTGTAGGAAGAGCAACTGAATGAGACCCCCTCCCCAACCCCACTCCCGCCCCACCCCCACCCCTGCCCTGCTGACCCCCGTGGAACCAGAGGGGCCTTAGGGATTGCAGGCCACTAAGCCTCTCTGCGCATTATTCACCGTGCACTGTCCATCTCCCACGCAG
Seq C2 exon
TGACTGCCTGGCCCTGCTACAGGTCCGAGCCATCTTGCGCCACCTAGGGCTGGAGAGCACGTGTGACGACAGCATCATTGTGAAGGAGGTGTGCACTGTGGTCGCCCGGCGCGCGGCCCAGCTCTGTGGCGCAGGCATGGCCGCCGTGGTGGACAAGATAAGAGAGAACCGTGGACTGGACAACCTCAAAGTGACGGTGGGCGTGGACGGGACACTGTACAAGCTTCATCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000628-Hk2:NM_013820:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACTTGGGCGAGATTGTGC
R:
CTTGTACAGTGTCCCGTCCAC
Band lengths:
356-955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: