BtaINT0072321 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013108 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]
Coordinates
chr11:9735924-9739860:-
Coord C1 exon
chr11:9739705-9739860
Coord A exon
chr11:9736158-9739704
Coord C2 exon
chr11:9735924-9736157
Length
3547 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
ACACTGTTTCTGATCCCCAGGGA
3' ss Score
9.14
Exon sequences
Seq C1 exon
ATTTGAAAAGATGATCAGTGGAATGTACATGGGGGAACTGGTGAGGCTTATCCTGGTGAAGATGGCCAAGGAGGAGCTGCTTTTTGGGGGGAAGCTCAGCCCTGAACTTCTTGCCACAGGCCATTTTGAGACCAAAGATGTTTCAGATATTGAAGG
Seq A exon
GTAAGCTTCGGGTCCTTCTCTGTTTGCTGGGACCTCAGAAGGGTGGACAGATGGCTGGGGAATGAGGAAGAAGCTCAGGCTGTTGACCCTTCAGATGTGGACAGCAGGAAGGTCTCCCCCAGCGTGAGGCCTTGGCCTCACGTGGCAGGCCTATGGCTTGATGTCACTTGCCACATATTTTCCACTTGTGTCTGTTTTGAATGTGCTGACTACCAGAGTGACTCATGGTGCTGGGGAGAGCTGGCCCCCATGCAAGGACTTTCACTTTTGTACTCGAGTTCCTGCCTGGCACAGGGATCTCAGCTTTATGCTAGAGGTTCCCTGTGGACCCTTCAATGATTTATTTTCATCTACTTCTCTTTCCTGAAGCCCTGGCATTTCATTCCTTTTGTTGTTTAGTTGCTAAGTGGTGTCTGGCCCTTTGCGATTCCATGGACTGCAGCACGCAGACTCCCCTGTCCTTTACTGTCTCCTGGAGTTTGCTCAAACTCATGTCCAGTGTTCAGTGATGCCATCCAACCATCTCATCGCTGATGCCCCCTTCCTCTCCTGCCTTCAGTCTTTCTCAGAATCAGGGGCTTTTCCAATGAATTGACTCTTCACATCAGGTGGCCAAGGTATTGGAGCTTCAGCTTCAGCATCAGTCCTTCCCAATGAATATTCAGGACTGATTTCCTTTAGGATTGACTGGTTTGATCTCCTTGCAATCCAAGGAACTCTCAAGAGTCTTCTCCAGCACCACAATTTGAAAGCATCAGTTCTTTAGCACTCAGCCTTCTTAACTCTCACATCTGTACATGACTACTGGAAAAACCATAGGTTTGATTATATGGACCTTTGTCTGCAAAGTGATATTTCTGCTTTTAATATGCTGTCTGGGTTTGTCATAGCTTTTCTACCAAGGAGCAAGTGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCGAGAAAATAAAATCTGCCATTGTTTTCATTTCTTTGCCCATCTATTTGCCATGAAATGATGGGACCGGATGTTATGATCTTTGTTTTTTGAACGTTGAGTTTTAAGCCAGCTTTTCCACTCTCCTCTTTCACCTTCATCAAGAGGCTCTTTAGTTCCTCTTTGCTCTCTGCCATTACGATGGGACCATCTGCATATCTGAGGTTATTGACATTTCTCCTGGCAGTCTTGACTCCAGCTTGTGATTTATCCAGCCCAGCATTTCACATAATGTACTCTGCATAGAAGTAAAATAAACAGGGTGACAATATATAGTCTTGACATACTCTTTTCCCAGTTTTGAACCAGTTCATTGTTTTATGTCCAGTTCTAACTGTTGCTTCTTGACCTGCATACAGATTTCTCAGGAGGCAGGTAGGTGGTCTGATATTCCCATCTCTGTAAAAATTTCCACAGTTTGTTGTGATCCACACAAAGGCTTTAGCATAGTCAGTGAAGCAAAAGTACATATTTTTCTGGAATTTCCTTGCATTTTCTATGATTTAACAGATGTTGGCAACTTGATCTCTGATTCCCCTGCCTTTCCTAAATCCAGATTATACATCTGGAAGTTCTTGGCTCACATACTGTTGAACCTAGTTTGAAGGATTTTGAGCATTATCTTGCTAGCATGTGAAATGAACACAATTGTATGATAGTTTCAACGTTCTTTGGCATTGCCCTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTAGCCATTGCTGAGTTTTCCAGGTTTGCTGGCATATTGAGTCCAGCACTTTAACAGCATCATCTTTTAGGATTTGAAATAGCTCAGCTGGAATTCCATCACCACCACTAACTTTGTAGTGATGCTTCCTAAGACCTACTTGACTTCACCTCTAGGATGTCTGGCTCTAGGTGAGTGACCACACCACTGTGGTTATCTGGATCATTAAGGCATTTGTACAACTCTTCAGTGAATTCTTGCCATTTTTTAAATATCTCTGCTGCTTCTTTTAGGTCCTTGCCATCTGTGTCCTTTATTGTGCCCATCTTTGCATGAAATGTTCCCTTGATATCTCCAGTTTTCTTGAGGAGATCTCTAGCCTTTCCCAGCCTATTGTTTTTCTCTATTTCTTTGCATTGGTCACTTAAGAAGGCTTTCTTCTCTCTCCTTGGTATTCTCTGGAACTTATTTAGTTGGGTGTATCTTTCCCTTTCTCCTTTGTCTTTCACTTCTCAGCTATCTGTAAGACCTCCTCAGACAATCATTACCTACTGGCGATTTTCAGAAAGGGCTTTATCCTGACTCGTGCTTCATAACAGAAAAAGAGGTCCTTGGATGACCCATTAGTTCCAAAAGTTAGAGTTGAGGCCTGCATTTTCACTGAGCAGCGGGAATGGGAGTGAGCATGGCCTGATTTTTGTTTTCCAATCAACGATATCCAAAAAGTTGGACTTGGTTTCCTGTTGTTGTTGTTTTTTTTTAACTGCATCTTTATTTATTTATTTATTTGTTTTTGACTGTGCTGTATCTTCATTGCTGTGCAGACTTTCCTCTAGTTTCAGTGAGTAGGGGCGGCTTTTCATTGCTGTGCGTGGGCTTTTCATTGTGGTGGCTTCTCTCGTTGTGGAGCGTGGACTCATTGGCTTCAGTAGCACGCAGGCAAAGTAGTTGTGGTTCCCGGGCTCTAGAGCCCAGGTTCAATAGCAGTGGCACATGGGCTTAGAATCTCTGTGGCATGTGGAATCTACCCAGACCAGGGATCAAACCTGTGTCTCCTGCATTGGCAGGTGGATTCTTTACCACTGAGCCACCAGGGAAGCCCTGGTTTCCTCTTCTTGAGACTTCCACTTGTCACTTGAGGAGGCCTTGTTTCAGGTACCAGATGGTGGAGAGGAGATGATTCTGGTGCTAACAGGAGCAGTGAGACAGTCCAAATGACTTTGTTATTAGTGGGATACTTGAATGAACTGTACCTCCTTGTTAAACTTGGAGGAAATGACAGTGCTCGATATTTGTGGACACTTAATTCCCCCTAAAAAGAGGGCTAATCTGAAAGCATCAACCCTTGACCAACATCTTTAGATGCAAGTTAAAGCACTGCCAACTGCACTGTGAAATGCAACAGACTGACTGCTTGATAGAGAGAAAGTAGGGTGGGCTCCACAGCTGGGTTCCTGTGGTCAGAGAGAGTTGGTGGCAGGGACAACATTCCCACTATCCTGAGACAAGCAAACTGGTGATACACACACAACTTGGTGTGTAAAGCCCCAGGAACAGGGCCTTGTCCTCCCATAGTGTGTGCATAAGGAAACTTGGTTGTTCTCACTGGGGAAACAGGGGCACCTGAAGTACTGCATGTGTTGGGGGTGGCAGGGGGGAAAGAAGACGTCAGCTTGTGCTTTCTTCGCCTCCTTGTTCCATAGATGGGCAGAACAGTGAGGCGGGTGTCTGCCTTCCCTGGGACGTGGCATTTGCCGGGGCTGAGGGCTTTCTCTGTGGGCACACATCTTCCCTCCCACCGGCCACGGTGAGTAGATGCCTGCTCACACACTGTTTCTGATCCCCAG
Seq C2 exon
GGAGAAGGATGGCATCCAGAAGGCCCGTGAGATCCTGGTGCGGCTGGGTCTGGACCCAACACATGAGGACTGTGTGGCCACTCATCGGGTCTGCCAGATCGTGTCCACACGCTCAGCCAGCCTGTGCGCGGCCACGCTGGCAGCCGTGCTGTGGCGCATCAAGGAGAACAAAGGCGTGGACCGGCTGCGCTCCACTGTCGGGGTCGACGGCTCAGTCTACAAGAAGCACCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013108:ENSBTAT00000060994:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development