BtaINT0072323 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014898 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr7:39708970-39712385:-
Coord C1 exon
chr7:39712309-39712385
Coord A exon
chr7:39709095-39712308
Coord C2 exon
chr7:39708970-39709094
Length
3214 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTATCCCTTTTCTCCCATAGGAG
3' ss Score
11.36
Exon sequences
Seq C1 exon
GCAAACCAGGCCAGTGGATGTCAATGAGAAAGAAGAGCTCAGATCTAAGGAGAGTGACCAACTGCTGCTTCTCCCAG
Seq A exon
GTAAGATTCTCCTGTAATTACTGCCAACCTCAGTTCCAGCCCCTTGCCCTCATCTCTCCTACTTAGGCCATCCTGGATGAGTGGAGGCTGGAAAGACTAAGTTGGCTCTTCTTTGATGGGAACCAGTGGTGGTTCCCATCCTTGGTAGAGGTCCTTGGCATACCTTTCAGAAGGAAGGCCCGTTTGATGTAGCTGATTCAGCTGAATAATGCCAACAGGCCCCTAGTTATTCAAACATGAGACCCTAGGCTGGGTTCAGGGATCTAGTGATGTGAGAGGCATGTCCCTCACCATAGGGACTCTCAGCTAGAAGGGACACAAATGAATGCATTTACCAGAAGTGTAAACACGGGTTACTTGAGGGAAGCTTTATAGTCTCTGACGTGTAGAAGTGCTGAATAAATATTGAATAGAAGAAGGAATGAATAAGAGAGTGAATAAATGAATGAATGAATGATCTAGCTGGGCCTCAAAAGGAGAGTGAAATCTCACCATGTCTGTATCCCTAGGCCTTCCTCTCCCAAAGATAATTGCCTTATTTACCCCATTTTATCCTCAAAAGAGACCTCTAACATATGTGGAACATACGTTTGACAGATTTGAGAGAGTATAGGTATATGTAACTTTGGGGAGATTTGTTGGAAACTGATTTCTTGGTTCTGTGAATAAGAAAAAACTCCCCATCTCTCAATTTTTCTAGCTGCTATGCAAGTTTTACTGGCAGCTGCTTAGGCCAAGCTCTGTGCTGGGCACTGAAGAAATAATGACTCAGACACAGCAATTCCAGGGAAGGCTGTGAACAAAAGCTGAACAGCCAGAGATAGGACAAAGCTCATAGTGTGTCTGGAATATGAAGGGGAGGAGCAAGAGAGGAAGCTTGGGTTGAGGACAATGTCAGGGGCCTGCAATGCCACAATAAAGCGTTGGGGACTTGTTTTTTCTGCAGTAGAAACCACAGTGTAAAGGTCATCTTCCTTTCTTAGGGGTGATGGAACTGGGGGATCACATGATAAAGTCTATTTTTGCAGTCACTCTGGGTGACATGTTTGTTGTGGGTAGGGTGGGGAGGAAGACACACAGGAGCAAGAGTTATCAATTAGGAGACTTGGAATAGTCAGATGAGTAGGTCTAGGACAGTGTGGGAACTGGGAGATGGGGACGCACAAGAGAGCTCTTTCCACTCTCAGCTTTTTCAGCCTGAGAAATGATTGCATGGAGGAATTGAAGGTCAGGGATGTATAGAGGCAACATGCATGCCTCTAGCCAAGGTGAAGGACAGGAGAAGAATTTCATGGGGAAAAGTGAAGAAGAAAATTAATGTGACTTTGACCATTGAGTTTGAGGAGCCTTCTCCAGCATCCAGAGATGCTAACAGACCATTGGAATTTGGCTCAGAACAGGGGTAGATTTGAGAACCTTCACACAGAGGTTTTAATCAAACCTTGGGGATGAGTGAGAAAAAGAGGAAGCATTGGAGAAGCAGGCTATGGCCAAAAACTTGAGAGCTCCATTGTTTAAGAGGAGTTACTGATGAAGACTTTGAGAGACTCAGGAAGGAGGCCAGGAAAGACTGATGGGCACAGCCAAGGGAGAAGAGAACTTTGCAGTGAAGAGAATTCTCATGGCTTTGCGTGCCTGAGAGGACAAAAGGGTGGGAACTGAGGAAAAGGCTGGAATTGGGCAGTCAGGAGATCATGGGTGACAATAGGAAGGGCAAATTCATGGATGTGTTGGGAGTGGCAGGTGGGTAGAGGTTGCGATGGTGGGAAGGCAACTTTCCCAAAGTTTACCTGTTATAGGAGAGGGCCAGATGCCTTCTGCCCATCTCGGGCCCTCCACTGCACCACCCCAAATGGCACTTGGATCATTGAAGTCTTCTTTGGAAACTTCCTGGTCCCCTTTTAATTCATATCCAGATGAAAAAAAAAAGGGCCTTGAGATGGAGAGGGTCTTCCCAGGTGGCGCTAGTGGTAAAGAACACCCCTGTCAGTGCAAGAGATATTAATCCCTGGGTCAAGAAGATCCCCTGGAGGAGGGTGTGGCAACCCACTCCAGTTTTCTTGCCAGGAGAATCCCATGGACAGAGGAGCCTGGCAGGCTAGAGTCAGACACGACTGAGGCAACTTAGCATGCACGCATGAGATGGAGAGACCTGGTGCGGCTGCTCTGTGGAGAGCTGTGTCCTCAACTTTGAGCACAGGGCTCTTTCAGGTCAGCATCATCCCACCTTCTGAAGCCCACCATGTTGTTTGTGTTGTACATCACAGTTCCCAAAGCATTTTCCCTGTTGTCACTCTATTTAACTCTGGTGACAACCTTGCAAAGGTGATACTATCGTCTCCTGTTTTTACACATAAAGAAACTGAAATGCAAAGTCATACATGCCCAAAGTCATAGCACTAGTGGAACCCTTTTCTGAAGTGTAGATCCGTCCCTGTCCCCATCTCTCTACGGCATGAAATTCACTCAACTTGGCATGAAGATGCCAAGCCAGCCTGCTTGCTTCTGCAGCAGATCTTAACCCGCTCCCCACTTAACTCACACCCTTTGTTCCAAACCTCTAGCACATCCCTGAACTCCCCAGTGCAGCAGCAAGTCCACCTCTGTCACTGCCTGTGTCGATCATACTGTGATTATTGGTAAAGCTGTGAAGTCCCTGAGGGTGTGGCCTAGGTCTGCTTCATCTGTACATCAGCATGTGGCACAGTAGACATTGTTGTTGTTTAGTCACTAAGTTGTATCTGACTCTGTGCTCCATGGACTGTAGCCCACCAGGCTCCTGTGTCCATGGGATTTCCCAGGCAAGAATACTAGAATGGGTTGCCTTTTCCTTCTCCAGGGGATCTTTCCAACCCAGGGATCAAACTTGTGTCTCCTGCATTTGCAGGCAGATTCTTCACCACTAAGCCACCAGGGAAGCCACGGTAGACATTAGGGACTGGTAAATGTGAATAAATGACAGAATGAATGAATGGCATTGGGATGAGAATCAGCCTTGCCAGTGCTCTCTCGCTGTACATGCTCTGGAAAATGAGGGCCTTCTGGTTGATTTACTAAAGGATCTTTGATGGTCAGAGATTCTGAGCTCTGCCCACATCTTCCTTCCTGGTCCCTTTCAAAAGGAAGAAAGTTAAGGGTCTTCATCACAGCCTCTGAGGCTCATCACAGACGGTGGAGTATGTGGTTCATCTGGACTATCCCTTTTCTCCCATAG
Seq C2 exon
GAGGCCACCCCTCACCATTGTGGAACCACATGGACTCCATTGGGTCTCTAGGGTTGCAGCAAGGGGAAGGAGCCCCCAGCTGCCCCCAAGAAGGCTTGCCTTGCCCCTCAAACAGCTCTGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014898:ENSBTAT00000019834:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.734
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0034916=Hexokinase_1=PU(2.4=15.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]