HsaINT0076388 @ hg38
Intron Retention
Gene
ENSG00000160883 | HK3
Description
hexokinase 3 [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr5:176896064-176899332:-
Coord C1 exon
chr5:176899267-176899332
Coord A exon
chr5:176896186-176899266
Coord C2 exon
chr5:176896064-176896185
Length
3081 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTGTCCCTTTTCTCCCATAGGTG
3' ss Score
13.09
Exon sequences
Seq C1 exon
GGGTGCCTCATATTGCCAGACAAGAGCTCAGACCTGAGGAGAGTGACTAGCTTCTCTGTGTCCCAG
Seq A exon
GTAAGCACTTCGGTCTAATTACTGCCTGCTCCTTCCACAGCTGTCTTGTCCTCATCCCTCCTGTTTGGCTCACACCAGGGGAAGTGGACACTGGAAAGATTAAGCCAGCTGGTTCTCTTTCTTTGTTTTTGAGATGGGGTCTCTCTCTCTATCACCCAGACTGGAGTACAGTGGCACAGTCAGGGCTCACTCCAGCCTTGACCTCCTGGGTTCAAGTGATCCTCCCACCTCAGCCTCCGGAGTAGCTGAGACTACAGGCGCACACCACCACACCCAGCTAATTTTTGTTATTTTTTTCTAGCGATGGCGTTTTGCCATGTTGCCCAGGCTAGTCTCACATTCCTGGGCTCAAGCAGTCTGTCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGCAAGCCACCACACCCAGCCTGCCAGCTGGTTCTCGATGGCAGCTCCCAACATCAGTAGAGGTCCCTGGGGTACTTTTCAGGAGGAAAACTCACTTCGTGTAGCCCATTCAGCTAAGGGAAGCCACGGGGCCCTTAGGCAAACAGACCCTGGGCTCTGGGGATACTGCAGTGAAGGAGACATGTCCCTCCCCACAGGGAATCTCAGTGGGAAGAGACAGAGCTGAATACATTTACCTAGCATATAAATATTAGGGCTACTTGGGGATTGCTTCACAGATTCTGTCATGTAAAAATGCTGAATAAATATTGAATGGATGAGGGAATGAATGAGTGAGTGAATGAATAAATGAACTAGCTGGGCCTTGAGAAAGACACGTGTGTAGCCCTTAGTCCTTTTCGAAGGTAATTGCCCCAGTTACCTCATTTTATCCTTGAAATAGACCTGCAGCATAGAACAAGAATTCCACACCCCTATTTGACAGATTTGGAAACTCAGCATAGGTATGTATGGTTTGGGGAGATTTATCAGAAGCTGATTTGTTGCTTTATTAAATAAAAAACTACCCACTCCCCTTGCTTCCAATTTTGGAAAGGCACATTAGCACATACCTATACCAGACCCTGTGCCGGCCATGAGTGCAGAGGTGATCAAGTTGGGTGGGGTAAGGAGGTGAAGAAACTAGAAGCAGAGCTATCAGTTTAGGAGGCTGTTGTAATAATCAGGCCGGAGGATGGTCTGGTGCAGTGTGTGGGAATGGGGAGGAGGGGATGCAGAGGAGAGCTCTTAGAGAGCCTGAGATCCAATTGCATAGAGGAGGTGAGGGTGAGGGATGCGCGCAGGCAGCCCGAACGGCCGTGTGAGTGAGCACACTTCGATGTCTCCAGTCAAGGTGGAGAACAGAAGAGCTTTGTGGGGGTAAGGTGATGGAAAAATGAGTATGGCTTTGTTGAATTTGAGGAGCTTCTCCACCATCCAGATAGTGATGTCTAACAGACCACTGGGATTTAGGATTTGGCTGAGGCCAAAGGTAGATTTGGGAGCCCTGACACAGCTATTAATGAAACCTTGGGAATGGGCGAGATAAAGGGAGTGTAGAGGGAGGGCATGACCGAAACTTGGGAACCCCATTGTCTGAAGGAACAGAAATTACTGATGAAGACTACGAGAGACTCAGGAAGGAGACCTAGGAGAGACTGGCCGTGAAAGCCAAGGACAGGGGGAATTCTGTAGCAAAGAGAATGACTACTGGCTTTGCATGCCTGAGAGAGGGCAGCAGAGGTGGGGACTGAGGAAAAGGCTTGGGATTGGGCAGTTAGGAGGTCACCAGTGACCACGTGGAGGGCAAATTAGTGAGCATAGTGGGAGTAGGCAAGGAGGGGAGTGTAGGGGTGGGAAGGTACTATATTTCCAGAAGTTCTGCTGTTGCAAGGAAGGGAGGTAAAGTGACTCAGTGGACAGATGTCTCTTCCCATATTGGGCCCTCTGCTGTGTTTCCCTTTTCCCCCACCCCTAAAGAGCACCTGACTCACTGAGGGCTCCCTTGGGACTATGGAAACAGCAATACCACCTCCAGCTCGGATGAGCGAAGTATCTGACATTTCTACAGTTCCTTACAGTGTGCAAAGGACCACTAACTCCTTTAATCCTCACAAGAACTGAGCTTTTCATGTTATAGAGGAAATGGAGAATCATAGAGTTTCAGTTCAGATTCAACTACATAAATCTGAATGCACATCTGAGCAAGTTCCTTTGCTCTCGTGATCTCATTTGCCCCACACAACCCTTTGATACATGTTGGTCCCATTTCACAGATGAAAAGCCTGGAGGTTGAGATGGGGTGCAGCTGCCTTGTGGAGAGCAGGGTTCCCACCTCTGAGTACAGGGCTCTTTCTGCTCTGCATCACTTCACTGTTAAAACCCACCTGATGTTTATGTTGCACACTACATCTCATAAAGCATTTCCCCAGGTGTTATTCTATTTAGTGCTCACAACAACCTTGTGAGGGTAGATATTATTTCCTCCTGTTTTATGGATGGAAGCTGAAATTCAAAGAAGTCATAAATGACGTCCAAGGTCAGGTCACTAGTGGAACCCCTTTCTGAAGCACAGATCCACCCCTGTCCATGACCCCTGTTGCCTTCAGGATGAAATTCATGTGCCTTAGCCTGGCACAATGGCTGTCCCTTTTCCAGCCTGCCTGCTTCTCTGGCAGGTCTTTGGTTCCCTCTTTGTTCCAAGCCTCTAGCATGTCCCTGACCTCCCAACCACAGCAGCATGTCCATCTATTACATGTGGCCATCTTGCTCACTGCCTGTGCTAATCATACTGTGATTGTTGATGAGACTGTGAGGTCCCTGAGGGCAGGGCCTAGGTCTGCTTCATCTGTACCACAACGTCCAGCATAGCAGGCATCAGGAACTGGTGAATGTCAATGAATGACAGAATTAACGAATGGCATTTGGACTGAAATCAGCCTTTCCAGTGCTCTCTCATTAGACATGCTTGTGAAAAACAAGGGCCTTCTGGTTGACTGCTACAGGATCTTTGATGGTTGGAGGTTCTGAATTCTGCTCCCAGCTTCCTTCCTGGTCCCCTTCAGAAGGAAGGAAGTTGGTCTGGGTTACAGACTCCTAGGGCCTATAGAGTAAATGGTTGACCCAGGTTGTCCCTTTTCTCCCATAG
Seq C2 exon
GTGGCCACCTTCCACTGTGGAAGCTCATGGACTCCATTGGGTCTTCAGGGTTGCGGCAGGGGGAAGAAACCCTGAGTTGCTCTGAGGAGGGCTTGCCCGGGCCCTCAGACAGCTCAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160883:ENST00000292432:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.938
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0034916=Hexokinase_1=PU(2.4=15.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development