RnoINT0070977 @ rn6
Intron Retention
Gene
ENSRNOG00000026235 | Hk3
Description
hexokinase 3 [Source:RGD Symbol;Acc:2798]
Coordinates
chr17:10137974-10139658:+
Coord C1 exon
chr17:10137974-10138030
Coord A exon
chr17:10138031-10139539
Coord C2 exon
chr17:10139540-10139658
Length
1509 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTATCCCTTTTTTCCTGTAGGTA
3' ss Score
11.7
Exon sequences
Seq C1 exon
GTCGTCTTATTTGGGAGCTGAGACTTGAGGAAGGTGATAACTTCTGAATCCCCCCAG
Seq A exon
GTGAGCACTTCCTTTAATTCCCTCGGGCCTCATCTCAAACCCTTGGCATAGCCTATGGCTAAAGGAGGTCCTCAGTGGTGATGGCCCTACCCAGCCTCAGGAAGGGTCCCTAGAATACCATTCAAAAGGAGCACTTTTGAACCATGTGTGATTCAGATAAGGGAATCCAAGAAGCCCTTAGTTCAAACAGACTGGTTTCTGGTGATGGAGGAGTAGAGATATGTTTTTCACTCGAGGAAGAGAAAGGTCCGAATGCACGAAACTGGAGTTTAAATCCTAGGGTTCCTCGCTAATCTGGCTTGTGTGGAGTAAACGTTGAGCTCATGAGCAGGTAAGTGCGTGAATGATTACTAGGATGTATGCTCTCTTCTGACTAATTTGGAAACTAAGTGTTGTATATATAATTTAGGGGAGACTTGTCAGAAAAAAAATGTCTTGGTTTACCAAATTACTGCCTCCTTTGGAGATAGGGTCTCACTATGCAGCCCAGGTTATCCTCAAATTCAGAGTATTCCTGCCTCAGTCAGCCTAATGCCAGGTTTATAGGCATGAGCCCCGGGTCTAACCCTGCCCGACCCTGTCCTGGAATTGAAGTGCAGAGGTGACTCAGACATCACAAGGTTATGAGGCCAGCCCTTCCCACTGGGGAACAACTTAAGTGAAGACTAAAATGCAGAAGACAGGAAGTCAGCGTGTGTGGAGTTTGGAGGAGCAAGAGAAAGCTTAGGGTGAGGCCACATGAGGGTCTTGCAATAGCACCACTGAGTTCTTCCCCGTCTGCAGGAGGAGCCATGACAGCGTGAGCCAGAGTCAACCTGCAGAAGCAGGAATACCAGTAGTTGTGGGGACAGGAAAGAGAGGACAGGCAAGAAACTGCTTGCTCAAAGCTCCAGCTAGGACCTGAGTAACTGCTCTCTTTTAAGCAAAACTCTTGATGCTTCTAGCCAAGTTGAGGGCAGGAGATTTGTGGAAGGATCGTGGAGAAATGAATCTGCCTTTGCTGAGTTCAAGGGACCACTACACTGCAAGTGAGAGCTGACAGACTGCTGGGATTGGCATTTGGCTTGCAAGTGCCTGATTTGGGAGTTCCGACGCACGAGTTTTAATGGTAAAAAGGACGGAGTATAGAGGAAGGCACAACTGTCCTTGGAGGCTTGGAAACTGTACTGTGTATTTAAAGGCACAAGAGAAGAGTTACTTACTGATAAAGACTCAGAAAGGGCAGCCACGGTAGACTTCAGGGGCCAAGGAAGGAAAGAAACCAGGGTCAGAGGGGCTCCAAAGGTTTAGGATTGGGCGGAAGGGGAAACATTGTTACACAGGCTTCTGGAAAACAGCTGACTCCTCCTGGATCGCTGAAGGATCTTCACTGGTCAGACGTTTTTCCAACTGTGTACAACTCCACTCTTCCTTCCATTTGGAAGGAAAGAAGTCGTGGGTTTGAGTTATTGCCCCTTGGAGCCTGTAGACTAACCAATCTTGAGTCCAGCTATCCCTTTTTTCCTGTAG
Seq C2 exon
GTAGTCAATACCATTGTGGAAACATGGCCGCCATTGAGCCTTCTGGTCTGCACCCGGGAGAAAGAGACTCAAGCTGCCCCCAGGAGGGCATTCCAAGGCCCTCAGGTAGCTTAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026235:ENSRNOT00000031935:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.722
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0034916=Hexokinase_1=PU(1.9=12.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]