Special

BtaINT0072329 @ bosTau6

Intron Retention

Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr7:39694287-39696535:-
Coord C1 exon
chr7:39696436-39696535
Coord A exon
chr7:39694471-39696435
Coord C2 exon
chr7:39694287-39694470
Length
1965 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CCCATCTGGCTCCTCTGCAGGAA
3' ss Score
8.97
Exon sequences
Seq C1 exon
GCAGTGGAGCTGAATGTGGTTGCCATTGTCAATGACACGGTGGGGACCATGATGTCCTGTGGCTACGAGGACCCCCATTGCGAGGTCGGCCTCATCGTCG
Seq A exon
GTGAGGAGGGCCCTGCCTTTTGTGCCTCTACTGCCTGATGCTAATTTACTGCCTCCTGTTGATTCCTCAGGTCGGACGTTCCCCTCACCTTGGGGATGTGGCATGGGACCTGAGCCCATGGGACCCTGGAACACTATTGGGTTGAGAGACTGGAGCTTGGGTGTCTAGTCCAGCTCAACTGCTGACTCATAGTCATTTAAGCTCTCTGAATCTCAGTTTGTTTATCTGTTAAATGAATGTGAGCTTTGGAATGTTACAGATTTGAGTAGAAACACTAGCTCTGTCAGGCTTCCTTGGTAGCTCAGCTGGTAAAGAATCCTTCTGCAATGCAGGAGACCCCAGTTTGATTCCTAGGTCAGGAAGTTCCCCTGGAGAAGGGATAGGCTACCCACTCCAGTATTCTTGGGCTTCCCTGGTGGCTCAGACAGTAAAGAATCCACCTGCAATACAGGAGACAAGGGTTCGATCCCTGGGTTGGGAAGATCCCCTGGAGGAGGGCATGGCAACCTACTCCAGTATTCTTGCCTGGAGAATCCCCATGGGCAGAGGAGCCTGGCTGACTATAGTCCATGGTGTCACAAAGTCAGACATGACTGAGCGACTAAGCACAGCACAGCATACTAGCTCTGTCACTTACCCCTGTATGACTTTGGGCAAATCGCCAAAGCCTCAGTTGGATCTCTAAGGTGGAGATGATAACGTAACAATGCCTGTCTGAAGGCATGATGAGGATGAAATGAGAGGGGACAAAGTGTAGCAAGACACACACGGTATTTGGAATGCAGTGGACCCCAGGGGTGGGGGTGTACAGAGAATGAGTTGAGATGGTCCTTTGAGAAGTCCAAGATTCTAAATCTTTATTAAGCTCCTCTCCTCTGGCCAGTTGGAAGCTGGATATAGGGACAGAAAGACATTAAGAAGGGGAAAATATCTGCTTTCTCAGAACTGACTGTTTAGTGGAGATTGAGTCCAGAAGAGCACCTGGACATCAGAGAGAGCTGAACCCAACTCTAAGTGCCAGGGCAATGAAGCCAAGATCAGAAAAGAAGCGGTCCCAACATGAGCGAGACTTGAAAAGAAAGCCTTGAAAAAAGGGATTGACTAGATGGAGGAGGAGGGCTCTCATAGTTCCTTGGACATCCGTCTTAGCGCGGGGGGTATGTGGCAGCCTCGCAGGAGACTGGGAGCTTCTTGATCATAGTGCCTGGCACTGGGAGGTGCCAGAGAGAGGTGGCCCAGATTGCTGTGTGGATAAGTAACTGGATGGAGGAGTTCCAGGGGCCAACATACCTGCTTAGAGTTGACCGTGTGTTGGGGAGAGGAAGGAAATACCTTTACCCAGCGTATGCCCTCTCTCTGTAAGCTTCTTGGCGTCAAGTTCACATCTAAATGTCATGTTCCCTCTGTGGTTTTTCCTAACTTTTGAGACAGGAAGACTCACCTGTGCTTGGGCATCCCACGATGCTGTTCTTTGCACCTCTGTTTGGGCAGCATCACAGCTGGCTGCTCATTGCCCAGGCTCTGGCCACTATGGGGCTCCTCCTCATATCTCATTTTTATGTCCCTGGCTCCTGGCCCAGCACCTGCTATTTGACTAAAGACCTGGAAGGCCAGTCCAAGACGGTGTGGGCCTCTCACCTGTGTGACTGCGGGGCTGTCACACATCTCCCAGGAGATGACATGACAGGCATTTGGGGAGCACCCTGAGGCAGCATGGGAGATGGACTGATGGTGGTGCTGGTAGGGGAAGTAGTGGAGGCCCAGGGGGCTTGGTGGTGGCAGGGTCTGCAGAAGGGATGTGAGAAAGGGAGGAAAGAGGACTGACCTGGCCCTGGAACAGGCCAATGAGCATGTGGAGATGGAGAGGTAGGAAATGAGTGCAAATGTTGCCATCTCGGTGGGAGGGGCTCAGAGGGATCCTGTGGGCATCAGTCAATGTAGACACCCCATCTGGCTCCTCTGCAG
Seq C2 exon
GAACAGGAACCAATGTCTGCTACATGGAGGAGCTCCGGAATGTGGCAAGTGTGGATGGGGACTCAGGCCAGATGTGCATCAACACGGAGTGGGGCGCCTTTGGGGATGACGGCTCTCTCAGCATGCTCAGCACCCGTTTTGATGCCAGTGTGGACCAGGCATCCATCAATCCCGGCAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014898:ENSBTAT00000019834:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0034916=Hexokinase_1=PD(11.5=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(25.4=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
ALTERNATIVE
(hk1)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGCTGAATGTGGTTGC
R:
CTCTGCTTGCCGGGATTGATG
Band lengths:
282-2247
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]