RnoINT0070983 @ rn6
Intron Retention
Gene
ENSRNOG00000026235 | Hk3
Description
hexokinase 3 [Source:RGD Symbol;Acc:2798]
Coordinates
chr17:10150095-10151920:+
Coord C1 exon
chr17:10150095-10150194
Coord A exon
chr17:10150195-10151736
Coord C2 exon
chr17:10151737-10151920
Length
1542 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
3' ss Seq
TGATCCTGGCCTGTCTGTAGGAA
3' ss Score
7.68
Exon sequences
Seq C1 exon
GCAGTGGAGCTGAATGTGGTTGCCATTGTCAATGACACGGTGGGGACCATGATGTCCTGTGGCTATGATGATCCCTGTTGTGAGATGGGCCTCATTGTCG
Seq A exon
GTAAGGAGGGTCTTGCCCTTTCTGCTCCTAGTGTCTGATAATTCATTGCCTTTTGTTAATTCCTGAGGTTGGATCTTTCTCTGACCTTGGGGATATGGGATTCTTTCTGTATGACCCAATTGAGTTCTGGGCCATAGCACTGAGCTAGGAGTCTGAACTGGGGCGTTTAGTCCAATTTAACTATTAAGCCATTGAATCTTTCTGAGCCTCAGTTTTCCCATTTGGTAAATGCATCTCTGTGAGACTGGCTATGGTGTTCCCATCTGTCTGACCTTGGGTAACTCACTAGAGTCTGATCCTTCACCTCAAGGTATGACATGGCGGTGCCTATGTCAAGAGGTTAAGAGAACAGAATGAAGGGTTGGGGATTTGGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCTCAAGGTCCTGGGTTCGGTCCCCAGCCCCGGGGGAAAAACAAAAAAAGAACAGAATGAGAAGGGGCCCTTGTGTAGTACACTGCCTGGGTCATGGTGTATACTCAGTGTTTGAAATGGGAGGGCATGGCTGGTCAGTGACTCGTGAGGGTTCTTTAGATGTCAAGAGTCTAAGACATCGGCACGCTCTTACCCTGGGGCTACCCGGTGTCTGGATAAAGGGGCCAGAAGACACAGAAAGGAAAAGGAGCTCTACCTTCTCAGAACTGAACATCCAGAGGGGATTAAGCCTGGAACAGCCTGTGGCACTTACAGCTAACTCTGACTGCACACACAAGGGCAGACAGGCTAAGATCAGACAGGAATTAGTCCTGAACAAGTGGGAGATGATGCTTTAAAGGAGGCTTCTTTTAGAGCACTTGGTGGCCTGTCACGGATGGGAGACTTTTGAACACAGGCTCTGATTCTAGTAGGTGCATAGGAGAGGTGTAAACTATTAGAGAAATCCCAGGTGGGGCTATCAAGGGGCTCACGACTCAGAGCTGGAAATGCGCAGAGAGGAGGGGGTGTCTCTTCCTCTCTGTTTCTCGTATATCCCTTCCTCTGTGTAGCTTTTCTGAGTCTTGTAGGCAAAAAGCCTCCTGTGCCCCAGTGCTCTCACGATGCTCTTGTTTTTGTTTCTATGAGGACCTGTGGAAGTAACTTCAGAGAAAGCCATCCACTGCCTAACTTCTGGCTAGACAGTGGGGGAATCCTTGTGTCAGTGTTCTGTCTCCTCGGCTCCTGGCCCACTCCTGTCATTTTGATTAAAGGCACGCTGAGCAATCAGGAAACTTCTGCATCTTCCCAGCATTAGAGTGGAGTCACACGCATCCCCCTGGGAATGACCTGGTCGATGGCAGCAGAGGAGCCCTTTTGGATAGCATGGGAGACGCACTGATGTTGGCTCCGGGAGGGAGTGCAGAGGAAGTTCTGAGGCTTTGGCACTGATAATATCAGAGAGGGAGGCCAGGAGCAGGGGCTGGTTTTGAATGTGGGGAGATAAGAGAAAGGGTCTGATTTTGTTGTTTTGATGTGGGAATGACCATAAGGGCTTCGCATCCATAAGCAGCCCCAATCCCTTGATCCTGGCCTGTCTGTAG
Seq C2 exon
GAACCGGTACCAACGCCTGCTATATGGAAGAACTCCGGAATGTGGCGAGTGTGCCCGGGGACTCGGGCCACATGTGTATCAACATGGAGTGGGGTGCCTTTGGGGATGACGGCTCACTGAGCATGCTCGGCACCTGCTTTGATGCTAGCGTGGACCAGGCATCCATCAACCCAGGCAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026235:ENSRNOT00000031935:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.5=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGCTGAATGTGGTTGC
R:
CTGTTTGCCTGGGTTGATGGA
Band lengths:
280-1822
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]