BtaINT0073534 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005976 | HSD17B7
Description
Bos taurus hydroxysteroid (17-beta) dehydrogenase 7 (HSD17B7), mRNA. [Source:RefSeq mRNA;Acc:NM_001083375]
Coordinates
chr3:6642003-6645921:-
Coord C1 exon
chr3:6645727-6645921
Coord A exon
chr3:6642108-6645726
Coord C2 exon
chr3:6642003-6642107
Length
3619 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
ACCCCTCTCTGTGCCCCCAGGGT
3' ss Score
12.37
Exon sequences
Seq C1 exon
ATTCAGGAACTAGAATCTCTCCTGTGTCACAGTGAGAGTCCATCTCAGCTCATTTGGACATCATCTCGCAATGCAAAGAAATCTAATTTCAGCTTTGAGGATGTCCAGCACAGCAAAGGCCAGGAGCCCTACAGCTCTTCCAAATACGCGATTGACCTTCTGAGTGTGGCTTTGAACAGACACTTCAACCATCAG
Seq A exon
GTAGCCTGTCTCAGCAATATGGAGATGGCAGGGCAGTGTTTGCTGAACCAGCACTGATTGCTTAGTAAAATGGCTGGCTCCCTATTGTAGTGTGAAGATGAAATATTGTTTCTTGAGCAGGATTGCTGTGAGGACAAGGTAAGACATGACAAAGAGTGGCAGTTGATGTATAGGAAGTTTTAGAGCAGAGATAATGAGCTCCAGACTTGTAGGTATATGGGGGTTCATTTACCAGTCTGTAGCTCCTCTGGAGCTATAATTTATATAACAGAATGACACTACTAACGATATCAGTAGCTCCTGTTAAGCATTTGCCGTGTGTGTCACTTAATACCTTTCCCGTCACAGTGAGGTGGGTCTGAGTATTCCTATTTTCATACGAGGACACTAAAGTTTGGAGTCCTTATTAAAGTCATTTACCCAGAAGTCACACAGTCAGTAAAGGGTAGAGCTCAGAGCTGAGCTCAAGGCTGTCTAACTTCAAGCTTGGACTTTTCCCATCAAGCCGTGCTGCCTCCAGTGTTATATCCAGTGTTACAGGACAGCTGGCAGTTAGAAAGCCCTTGGAGAGTGAGGATCTCTGGTGAGGCTGCAGAGGTTTGTCTTTTGAGGACTGGATTTAGAGAGCAACCCTTGTCAGACATGCTGGCTTCTGTGGCCTCTGTGGTCTGGAACTTAGTGCTTTTTTGTATGTTTCTCTTGCCCAGGTCCAAAATTTTAACTGGAAATCTCCAGTCTCTCCTGTGGGCATTTTCCTTTGCTTGCTTTGACTGTGTTTTTTGAATATGGAACTGGGGAGAAATTTAACTCTGACAATATTTACAAAAGCTGACCATTTTTAGGGTACTGACCCAGGCTGAAAATTGAGGAGGAAGGAGAAATAAAAGGCAGTGCAGAAACTATTTGCCCTTAAGGGGCTGTTTTTGATCATCCATTAGATACAGCAGTCTAAACCTTATGTAATGGTTTAGATCTGGTTGATTCTGGAATGGAGACCTTCATCAGCTGGAATTCTCACTTCTGAGAACTGGCTCTTAGGATTAAACCTCTTAGTGAAGAGGATGGTATAAAAGTAGAAGCTATGAGCACATTCTCTAGAACTGCTTTTGAATTCTGGCTCTGTCACCTCGGACAGATTATTTAATGTCTTTGCACTTCCAGTTTCCTCATCTGAGAAACAGGGTTAATAATAGTGTTTGCCTCATAGATTTGCTGGGAGGATTGAGTGATTGGAGTGGTATGAAGCATTGACAACAATGCTTTGTGTTAGAATGTGCCTGTGTATGTGTATGTATCTGTACATATGTGTACTATGTGCATGCATACATGCATGAGTATGCCTAGCCATGTGCACATGTGTGGGTTTTGTATGTTTGTGAACATGTGTATGAAGGTGACTATGTGTGGTTATGTGCTCATGGCTGTAGGTGTCTGGTCATGTGGTCTGCATCTGTTCATGTGTGTGCTTATGTGTTTGTTTGTTGGCTGTTGTTATTATTGTTATTATTCAGGCTCAGTGTGTTGGTCCACATGTGAGCCTCCTCCTGAGATTTCTTGGGATGTTTAAAAACTGTCACAACTGCTTGTCCTCTGGAAACTCCCTTTTAGGGATAAGGTCAGAGTGGATTTAGCTTCTTTTTTCATAAAAAGCTCTGAAATTTTGCTTGTCTCAATTGTCAAGTTTTGGGATTTCATCTTTAAAGAAAAAAAAAAAATTAGCTAATGCTGCCAGCTCCTTTAAAATCTGTGTGATTGGTTTGTAGCTCATGATCGTTCTACCTTGGCTTTTATGAAGAAAGAAGTAGCTAAGAAAGAACTACCTCCCTTTGAAGACTTGTATGACTGGAAATGTTGGATCCCTACAGGCTGCCTGGGAGAAGGCAATGGCGCCCCACTCCAGTACTTTTGCCTAGAAAATCCCATGGACGCAGGAGCCTGGTAGGCTGCGGTCCATGGGGTCGCGAAGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGTACGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTTGGACACGACTGAAGCGACTCAGCATCAGCAGCATAGGCTGCCTGATAGACTTTACCTGTCCATGAATGACTCCTCCTGTCACACAGCCTTGAGAAATACTCAGGGTCGTCACGCTCATTCCTTCAGATGAAATGTGTGAAGGGACTTCAGTTTAGGTAAGATGGCCTCCTTGCTTGTTTCTTTTGTTGCTCAATGTCAGAAAGTCGTGTGTGTTGAAAGCCCTGGATTTTAGTTCACAGATGTCTTCATTTAGGGCTGAATAGGTCCTAACTGTCCCTGGCTAGTTCCCAGATTAAGAAATTCTCCTTAGCTATCTTTGGGGCAAAATATTTGGGAAGAATTTTTGGTCTGTAAAGTTCCTGACTTTTTTCAGAGGACTGCTGGTCAATCAAGGGGATTCTCAGGTCTAAATTATCCACATCAGGCACCACCAGGCCCTGCAGCAGTGAATAAAGGAAGCCAGCCTTCTAGCTTCTGATACTCAGGGTGCTTTCTGTCCCCTGAACTGACTGTGGTATCCTGGTACTTTCTATTTTTGTTTAAAAGGAAAAAAAAAGTTAAAAGTAATAAAAATATGAATTAAAGTGAAAGTGAAAGTAAAAGTCAGTCGTGTCCAACTGACTTCATGTTTGCGACTCCATGGACTATACAGTCCATGGCATCCTCCAGGCTGAAATCCTGGAGTGGGTAGCCTTTCCCTTCTCCAGGGGATCTTCCCAACCCAGGGATAGAACCCAGGTCTCCCACATTGCAGGCAGATTCTTTACCAGCTGAGCCAGAAGGGAAGCCCATGAATTAAAATAGTCAATATCAAAATAAGGTGAAATGTGGTGAAAATTAAACCAAGTAAACTAGTAAAACAAATCCCAGTGTTCTAAGGATTACTACAGACCTTTCTATTATTAATATGTGCCATGTGTTAACTGGGGCTCTTTTTATAAAACAGGTCTTTCTAAAATGATGAGTGCAGGGCTAAGAACCTGATTTAGAGATCCTCAGTTAGAGGAGGTCTTTGTGGAATCATACCCACCTCTCCAGTGCCTCGAGCTAGAGCCCTAGGCCTTGTGTTCCTGCAGGAAACAGAGACACACTTGAGGTTTAGCTGTCTGTATTTACTAGAGTAGAAACTTCTTTCAGGCAAAGACTTTCTTTGTATGGCTCTCTTATCTCTCACTGCTCATTTTGATTGGTCAACTGATCTTCAGTTAAGCCATGGAAAACACAGATAACCAGTCCTGCTTTTCTCATCCAGCTTCAAGCTTGGTTACTCTTTGTTCTCTGAGTTACTTGAGAATAAAAGACATTATCAAGTGCCTCTCATAGTGAGTTTTCAGTACGTGATTCTTAAATTAAAATGGTCTACCCAGCTACAAGGACAGCTTAGAGCATCAAGCCTTGGCGCCCTGGCTTCCTGGCTCATTTGTGTTTCTCCTTTATTAACTGACATAGAGGCAGGCTCAATGTGTATTGAATTAAAATGAACTGCTACCCCTCTCTGTGCCCCCAG
Seq C2 exon
GGTCTGTATTCCAGTGTAGTGTGCCCAGGTACGATGCTGACCAATTTGACATATGGAATTCTACCTCCCTTTGTGTGGATGTTAATCATGCCAATCATATGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005976:ENSBTAT00000007841:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=PD(54.9=95.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]