RnoINT0071972 @ rn6
Intron Retention
Gene
ENSRNOG00000002826 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:RGD Symbol;Acc:2837]
Coordinates
chr13:88298751-88300174:-
Coord C1 exon
chr13:88299980-88300174
Coord A exon
chr13:88298856-88299979
Coord C2 exon
chr13:88298751-88298855
Length
1124 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
3' ss Seq
ACTGTGCTCTGTGCCCCCAGGGT
3' ss Score
11.43
Exon sequences
Seq C1 exon
ATTCGGGAACTGGAACCACTTCTCTGCCACAGTGACAACCCCTCTCAGCTCATCTGGACGTCTTCTCGAAATGCAAAGAAGTCTAACTTCAGTCTTGAGGACATCCAGCACGCCAAAGGCCAGGAACCTTACAGCTCTTCCAAATACGCTACTGACCTCCTGAATGTAGCTTTGAACAGGAATTTCAATCAGAAG
Seq A exon
GCAAGGCCCGTCTCGGAGGTGCAGATGTTAACAGTCAGGGTTGCCCTTTCCTTAGGGCAGAGATAAGCAGCACCCACCCTTTTAGAAAAATGGCATTTATTTCCTGTTCTGTACTCTTCAAGAACTCTGGTCCTCTGCTAATAGAATGACACGTGTTTACTCCAGTACAGCCACTAAGTACTTCTAGTGCTGTCTGTGCTTCTGTCTGCCTGCAGCTAGGTGGCTCACACCGTCTGGGTTTTCAGGTGAGAAAGTCGAGTCGTGTACTCAATGGTCACGTGTCCCTTGGACTTTGTTCTGAGCCTCCCGCCTCCAAGCCTCTGTCATGTTGATGACTAAAAGGCTGTCAGTCGTTGTAAACCTTGTGGAAGTGGATGATGAGGCTCTGTAGCTCTGTCTCTGAGCTTACAGAGTGCGAGGGTTTTATATAAACGAGAAGATACCCCTTACCAGTCACAGTCACCTGGAGTCACTGCCGCTTTGAGTGAACGGTTGGCCAGGTCCAAAATCTTCACCAGAATCCTTGGCTTCCCCATTGGCATGTTCTGGTTGTCATTACAGCTTAGATTCAGAGTGTTGGTCCAACTCTTGAGTTGTCCTCCTAACATCTTGAGGTCTTTAGAATTTGTCATGGCTGCTTCAAAGTCCCCTTGACATTCCTTTCCGAGGGCAGGGTCAAGCTGAATTTGTTCCGTGTTTCATAGAAAGCTCTGGGATTTCTTTTGCATTTTAGTTGTCAAGTAAAACATGGGACTTGTTTTTAGCTCACGATTCCTCTTTCTCAGTGTCCCAGGAAAGACAGTTTTAGAATTAAATTGGGGGATTCCATCTTTCCAAATTTTTGGTTTACTTTTTTAACAATATTATTATTATTATTTTAGTATTTTTGATGCTGGTGATCAAGCCCTGGCCTTTGTACTCGGTGCAGTGCCACTTGAGTTAGAGCCTCAGTTCTTGTTGACTTTTGCACCCTCACCCCTGTAAGTGATTTTAGACTTAAGTGGTCCTACTAAGCATCAAGGACAACTGAGAGTCCAAACGCTGCCATTCCCTAAGTTCATCCTTGAACTAAGTCACTTTGCGTCAAATCGGAATGTCACTGTGACTGTGCTCTGTGCCCCCAG
Seq C2 exon
GGTCTGTATTCCAGTGTGACGTGTCCAGGGGTCGTAATGACCAATCTGACGTATGGGATTCTGCCCCCCTTTGTTTGGACGTTGCTTCTCCCGGTGATATGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002826:ENSRNOT00000003812:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGAACTGGAACCACTTCT
R:
AGCCATATCACCGGGAGAAGC
Band lengths:
297-1421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]