BtaINT0074559 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014093 | IDH2
Description
Bos taurus isocitrate dehydrogenase 2 (NADP+), mitochondrial (IDH2), mRNA. [Source:RefSeq mRNA;Acc:NM_175790]
Coordinates
chr21:21908104-21909236:-
Coord C1 exon
chr21:21909093-21909236
Coord A exon
chr21:21908241-21909092
Coord C2 exon
chr21:21908104-21908240
Length
852 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GGACCTCTCTCTCCCTGCAGTCC
3' ss Score
10.7
Exon sequences
Seq C1 exon
TACAAAGCCACAGACTTTGTGGTTGACCGGGCTGGCACATTCAAGGTGGTCTTCACCCCGAAGGATGGCAGCGGCCCTAAGGAATGGGAGGTGTACAACTTTCCTGCTGGTGGCGTGGGCATGGGCATGTATAACACGGATGAG
Seq A exon
GTGAGCAGCGGCGCCTGGGCTCCCTCCCCCACCCATGTCTCTGTCTCCAGCCACATCGGGTTGGTGGTTCTGACTCTTCCTGTGTCGGTGGCCTGAAGGTCTGAGGCCTGAGAGCAAATGCATCTTTAAGTGTATTCAGGGGGCCCTATGGTACGCCTAGCATCCTGTGCTCATTCTCGGGTGCGTCTTGGGGCATATTGGTTGTCAGCTCTTGGTTTACAGCAAACTGGGTAAGTGCTTCTTTCCCTCCCTACCCCCATTTCTTGGCTTTCCTTTCCTCTGTGGTTGGCCTCATTCTTAGGCCGTGAAGAAATGGCCAACATTGGCTCCGGGCTTATCCCTGCCAACCTGGCTATCCTGGCAGAAAAGAGCCTTTTTGGCTCCTGGTTCCAGCAAAAGTAGATGGCTTGGGTCACATGGCCATCTCCCAGCCAATCGTGAAGGCCCAGGGGAGGAAGGGCTCTGACTGGATAAACCCGGGACACAGGAAAGACAAGTAGGTGGGCTGAGGGCATGGCCCCACCCTAGCCATATGGTTTTGGAAATGGGGAAGGTGATAGCTTTTCCAAGTAAAGCTGGGCGTCTGCTTTCTCCCAGAAATTGGGAGTAGGGTGCTGGGCCAGCAGCAACAGCAGATGCTCACTCCAGGAAAATAAAAAGTGAAAGTGTTTGTCGCTCAGTCGTGTCTAACTCTCCATGTCTGTAGCCCGCCAGGCTCCTCTGTCCACGGAATCCTCACTCCAGAGGGCTGGGTGAACCCTGACTGCCTGGGTCGAGTGCGGGGAGGGGACTGCTGTTCCCAGGGCTGGGCCTGCCTGGGGGACCATTCCAGGGACCTCTCTCTCCCTGCAG
Seq C2 exon
TCCATCTCAGGTTTTGCACACAGCTGCTTCCAGTATGCCATCCAGAAGAAGTGGCCACTCTACATGAGCACCAAGAACACCATCCTGAAAGCTTACGACGGGCGCTTCAAGGACATCTTCCAGGCCATCTTTGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014093:ENSBTAT00000018741:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=FE(11.8=100)
A:
NA
C2:
PF0018015=Iso_dh=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACTTTGTGGTTGACCGG
R:
TCTCAAAGATGGCCTGGAAGA
Band lengths:
271-1123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]