GgaINT1015155 @ galGal4
Intron Retention
Gene
ENSGALG00000022565 | IDH2
Description
isocitrate dehydrogenase [Source:RefSeq peptide;Acc:NP_001026770]
Coordinates
chr10:19520883-19521257:-
Coord C1 exon
chr10:19521114-19521257
Coord A exon
chr10:19521020-19521113
Coord C2 exon
chr10:19520883-19521019
Length
94 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
GCACCGCGCGTCCTTTGCAGTCC
3' ss Score
8.01
Exon sequences
Seq C1 exon
TACAAAGCCACTGACTTCGTGGTGAACAAGTCCGGGACCTTCAAGATGGTCTTCACGCCGAAGGACGGCAGCGGGGTGAAGGAGTGGGAGGTGTTCAACTTCCCCGGCGGCGGCGTGGGCATGGGCATGTACAACACGGATGAG
Seq A exon
GTACCGGGGGGCTGCGGGGGAGCTCCGTGGTGCCGTGAGGCCCGAGGGGAGCCTGGGGGACCCCACTGAGCGTAGCACCGCGCGTCCTTTGCAG
Seq C2 exon
TCCATCTCGGGCTTTGCGCACAGCTGCTTCCAGTACGCCATCCAGAAGAAGTGGCCGCTGTACATGAGCACGAAGAACACCATCCTCAAGGCCTACGACGGGCGCTTCAAGGACATCTTCCAGGAGATCTTCGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022565:ENSGALT00000036142:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=FE(11.8=100)
A:
NA
C2:
PF0018015=Iso_dh=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATGGTCTTCACGCCGAA
R:
CATGTACAGCGGCCACTTCTT
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]