BtaINT0076507 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001354 | INPP5E
Description
inositol polyphosphate-5-phosphatase, 72 kDa [Source:HGNC Symbol;Acc:HGNC:21474]
Coordinates
chr11:103930423-103931201:-
Coord C1 exon
chr11:103931104-103931201
Coord A exon
chr11:103930548-103931103
Coord C2 exon
chr11:103930423-103930547
Length
556 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GACCACCCCCCGCCCCGCAGGCG
3' ss Score
8.94
Exon sequences
Seq C1 exon
GAGCTGCCCCCGAACCTGGACGAGCTCCTGCTGCCGGCCGAGGCTGACCTGGCCCAGGACCTGTATGTTGTGGGCGTCCAGGAGGGCTGCTCCGACAG
Seq A exon
GTAGGGCCAGGGCCTTCCCCCTGCTGCTGCCCCACATGCTCCACGTCCCCGACCCGCCGCTCCAGTGTAGTCCTGTGAACCAGTCTCGGTTCTTTGCCCGAGACCCCCCTGTGAGGGGAGACATGAGCTGTGGTCTAAGCCTGGGCTCAATCGGGATCGCTTTCTTCTCAAGTGGGGACTCAGAGTTGAAAAGAAATGCGATTGAGGTTCTTGTAAATAGATAGCTGCTCCAGGAGAAAGTGAGGGACCCAGCACAGCACGGCCCCCAGCTCAGCCCCTGAATGTCACTGCTTACCTGTCCCGGCCGTGTGGGCAGTTCAGCTGGTGACTGGGGCAGGGTCGCGGCACAGGCCTGGCCGGAGTGGAGGTGCCCGGTCTGCTCCGGACACTGGGGGGCAGGGTCTGGGCTCCAGGGAAGGTGGCCCCCTCCTGCCTCCCTGGGCTCCTGCTCTTGGCCTCTGGGAGGCAGCGGAGGACCCGTGGCCATGGTGGAGACGCAGGGGGCGGTCCAGGCTCGCCCTCGAGCTTGCAGCTCTGACCACCCCCCGCCCCGCAG
Seq C2 exon
GCGGGAGTGGGAGGCGCGGCTACAGGAGACGCTGGGCCCGCATTACGTCATGCTGTACTCGGCAGCCCACGGCGCGCTCTACATGGCTGTGCTCATCCGCAGGGACCTCATCTGGTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001354:ENSBTAT00000001784:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(11.4=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCCCCCGAACCTG
R:
TGAGCAGAACCAGATGAGGTC
Band lengths:
222-778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development