GgaINT0123720 @ galGal3
Intron Retention
Gene
ENSGALG00000001964 | INPP5E
Description
NA
Coordinates
chr17:8566932-8567772:+
Coord C1 exon
chr17:8566932-8567029
Coord A exon
chr17:8567030-8567647
Coord C2 exon
chr17:8567648-8567772
Length
618 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
GCTGTTGTTCTCTCCTGCAGAAG
3' ss Score
10.93
Exon sequences
Seq C1 exon
GAACTTCCAGAGAATCTGGATGACTTCTTGTTGCCAACAGATCCTGACTATGCCCAGGACATGTATGTCATTGGGGTTCAAGAAGGCTGTCCAGACAG
Seq A exon
GTAGCAAAAGCAATGTAATGAACCATCCTTTTTTCTTGTTAACTAGTAGCGTTGTTTTTAATTAGTCTGGAAATAATCATATTCTTCATAAACCACCTTGTAATGTCTGTGCATGAGCACCAGGGGAAGTGAGTGTTAGAGGAAAATGTCACAAAAATCTATAAATACAGAATGTGGCCCTTTCCCAGGGCAGCTAACAGAACTCCTGTTCAGTAAGAGTGTTATCTGAGCCAGTTGTAGCCTAGCTCACTGACCAGTAGTGTTCGCATTCTTGTGCTCGTTAGTACAAAGTTTACTATGTGAGATTGACTAGCCCTAGAAGAGTGGCTCAGAGCCTCATGTCAGTCCCTGCTCTTTTTTTTAGATTATCCTTCCAGTGGGAATTGTATTTCCTTGGATCTGAAAGCTCTCAGTCACCAACATGCAGACCCTGCTCCATGGTCGTGATTTAGACTGAGCAGCCTTTGTTGCAGCATTTCTTTGGCAGTGGGGGCTTTGCTTATACTCAGTTGCCATTCTTCGTTAGAGGGATCGCTCTGTTTTCACAATGCTGACTCTCTTTCCTGATTACTGTCTCTTGTACCATCTTTGTGATCCAGCTGTTGTTCTCTCCTGCAG
Seq C2 exon
AAGAGAGTGGGAAATCCGCCTCCAGGAGACGCTGGGCCCCCACTACGTCATGCTCTACTCTGCTGCGCACGGAGTGCTCTACATGTCAGTCTTCATTCGAAGGGACCTGATCTGGTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001964:ENSGALT00000003045:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(11.4=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATCTGGATGACTTCTTGTTGC
R:
CTGAGCAGAACCAGATCAGGT
Band lengths:
214-832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]