DreINT0081758 @ danRer10
Intron Retention
Gene
ENSDARG00000103926 | inpp5e
Description
inositol polyphosphate-5-phosphatase [Source:ZFIN;Acc:ZDB-GENE-050809-23]
Coordinates
chr5:64385591-64385889:-
Coord C1 exon
chr5:64385792-64385889
Coord A exon
chr5:64385716-64385791
Coord C2 exon
chr5:64385591-64385715
Length
76 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
GGCTTCATGTTTGTCCACAGGAG
3' ss Score
9.65
Exon sequences
Seq C1 exon
GGCCTTCCATACAATTTAGATGATCTGCTGCTGCCAACTGACACTGACTTTGCACAGGACGTCTATGTTATAGGGGTTCAGGAGGGCTGTCCTGATAG
Seq A exon
GTGAGATGTTGCTTTCTTGCAGCGTTTAAATGTCCTTCTTGATACTCATTTTCTTGGGCTTCATGTTTGTCCACAG
Seq C2 exon
GAGGGAGTGGGAGATCCGTCTGCAGGAAACTCTTGGGCCATATTACGTGATGCTGTATGCAGCAGCCCATGGAGTGCTCTATCTCACTGTATTTGTCAGGAGAGACCTCATATGGTTTTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103926:ENSDART00000162511:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(11.4=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATCTGCTGCTGCCAACT
R:
GTGAGATAGAGCACTCCATGGG
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]