BtaINT0077891 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24160296-24160709:-
Coord C1 exon
chr2:24160611-24160709
Coord A exon
chr2:24160358-24160610
Coord C2 exon
chr2:24160296-24160357
Length
253 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GTGTTTTTGATTTTGTACAGCCT
3' ss Score
7.24
Exon sequences
Seq C1 exon
ATCCCGGCCTGTGATTAATATTCAGCAAACCATCACAGTAACACCCAACAGAATTGATCTCCGTCAGAAAACGCTCTGTGGGGCGCCTAGTGGGATATG
Seq A exon
GTGAGCATTTGCGCCGTATCCACTCTTCCCCCACAGTTTCATATCTCTGCATTATGGTGACCCCGTTGCCCCAAGGAGCCATGGGGAAGATTAAGAGAAATGGGGAAAGGGAAGAGGAATCTTGTCAAGTGGGTATATAACATTTTACTCATCAGTCATCCCTGGGGGGATATGAGGATGAGGAACGTGTTGAGATTTTTTTTTCCAGGGCAGTAAGGCATTTCTTAATGACTGTGTTTTTGATTTTGTACAG
Seq C2 exon
CCTCAAGGTTAAGGCCTGTTTTGAATATACTGCTAAACCCACCGGTTACAATCCTTCAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=PU(6.7=94.1)
A:
NA
C2:
PF084417=Integrin_alpha2=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGGCCTGTGATTAATATTCA
R:
TGAAGGATTGTAACCGGTGGG
Band lengths:
156-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]