BtaINT0077894 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24151592-24154242:-
Coord C1 exon
chr2:24154099-24154242
Coord A exon
chr2:24151708-24154098
Coord C2 exon
chr2:24151592-24151707
Length
2391 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
ACAATTTTGTTTTCCTACAGGTG
3' ss Score
12.2
Exon sequences
Seq C1 exon
GAAAACATCAGAGATAAACTGCGTCCCATTCCCATAACTGCTTCAGTGGAGATCCAGGAGCCAAGCACTCGGAGGCGAGTGAATTCGCTTCCAGAAGTTCTCCCAATTCTAAATTCAAATGAACCCAAGTTTGTTCATACAGAT
Seq A exon
GTAAGTATTTCTGATTTTCATTTTACTAACTGTTTTCCATTTTATTATGCTAAATCAAACATCTCCGAAGGCAATAGACTAGTGACTGATTTGCCCTAAAGGCCATTCCTTTGTATATTAAATAAGCTTTTTAATATATGTATAGTTTGGAGAAAATTTGCGTCCCAAGTAAACAATGGATATAGAAACCTACAGAATACAATTTGGAGATGAGAGTTGTTTTTCTTAATAATTTCTGGTCATTGAGACTTACTGAGACTATAATTGGCAAAACTTATTATTCTCATGAGCTTCCCTGGTGGCTGAGATGGTAAAGAGTCCACCTGCAATGCGGGAGACCTGGGTTTGATCCCTGGGTTGGGAAGATCCCCTGGAGGAGGGCATGGCAACCTACTCCAGTATTCTTGTCTGGAGAATCCCCATGGACAGAGGAGCCTGGTGGGCTATAGTCCGTGGGGTTGCAGGTGGGCTATAGTCCGTGGCGTTGCAAAGAGTCAGACACAACTGAAATATATGAGAATGAAATAGTCAAAATTTAGTGTCTAATGTAGCCTATGTAATCTTAGGAAGTAAAATTTATATGGTGTGCCTTTCTGTATACCTCTTATTGAAGTGGTGGGTGTTTGTTTGCTAGGGTTTAGGATGCCTGCATCTGCAGGATTAGGCTGGGGACCGGTGACTCTTGATTTAATGTTTTATACTTGTCAAAATATAGTTGGTAGTGGAGTGTCCGCTCTGAGGTACTGGTTCTGGTGGCCCACTGACGAAGCTTTTCATGAATGAGTTAGGCTCATGCCTACACGTGCACATCGCAGTATTTGTTGCCATCAAGTGTAATTCCTTATGTGCTTTTCAGTACACTTTCAATGTCACTTGCGCAGTCACTAAGTCATGTCCATGGGCTGCAGCCCGTCAGGCTCCTCTGTCTGCCACTGTCTCCCAGAGTTTGTTCAAATTCGTGTCCATTGAGTTAGTGATGCTGTCTAGCCATCTAGTCCTATGGTACCCCCTTCTTCTGTTGCCTTCAATCTTTCCCAGCATCAGGGTTTTTTCTAATGAGTCAGCTCTTTGCATCTTCGCATCAGGTGGCCAAAGTATTGGAGCTTCAGCATCAGTCCTTCCAGTGAATATTCAGGATTGATTTCCTTTAGGATTGGCTGGTTTGATCTCCTTGCTGTCCAAGGGACTCTCAAGAGTCTTCTCCAGCACCACAATTTAAAAGCATGAGTTATTCAGTGCTCAGCCTTCTTTATGATCCAGCTGTCACATCAGTACATGACTACTGGAAAAACCACAGCTTTGATTCTGTGTACCTTTGTTGGTGGAGTGATGTTTCTGCTTTCTAATACACTGACTAGGTTTGTCATAGCTTTTCTTCCAAGAAGCAAGTGTCTTTTAATTTCATGGCTGCAGTCTCCATCCACAGTGATTTTGGAACCCAAGAAAATAAAATGTGTCAGTGCTTGCACTTTTCCCCCTTCTATTTGCCATGAAGTGATGGGACCAGATGCCATGATCTTAGATTTTTTAAAGTTGAGTTTCAAGCCAACTTTTTCACTCTCCTCTTTCACCTTCATCAAGAGACTTTTTAGTTCCTCTTCACTTGCTATTATTAGAGCAGTATTATCTGCATATCTGAGATTGTTGATATTTCTCCTGACAGTCTTGATTCTAGCTTCTAATTCATCCAGCCCGGCATTTCACATGATGCATTCTGCATATAAGTTAAATAAGCAAGGTCACAATATACAGTCTTGTTGTACTTGTCAATGTCACTTATTGTTACATTAATATTTCTTCTGTGTGTTCCCATATACACAAGCTCCATACTCATGTTAAACATAAAAAGCAAGAAGACCATTTTCCTAATTATTGATTAGTGTGATTATCAAGCATCCCTTAGCATAGTGCAAGATACTCTGCCCTTTGCTTTCCTAACCTTGAACTCTGTTTCCCCATCTGTGCAATGGGTCTCTGAACAGTATATGCGTCATAGTCCCTTGTGAGGATTGCATGAGTTTAAATACGTAGTCACGTGTTAGGTAGTACTGTCGTTATTGTTGTTAATTCTTATAGTAACCCTGTGTAGCAGGGTGGTGGTATCCCCACGTCTCCTGTGTTGAAACCTAGACTATGAAAGATTAAGTGACTGACCCAAAGCCACACAGCTGAGCCAGGCTTACTCTTTATTGTCCTATAGCATCTCACTGCCTTGGTCAAAGTGTTCTGAAAACACAGTTTCATTAAAGGACAGAGTGGGCGTTCGATGCAAAGTATGTTTGTAGTTTGAATTCTGCTATGGTAATTGTCACAATGGGAGATGAACTGTATGGAAACAGTCACCTATTTAGAGTCCTACATGGTGTAAATTACAATTTTGTTTTCCTACAG
Seq C2 exon
GTGCACTTCTTAAAAGAGGGATGTGGAGACGACAACATATGTAACAGCAACCTTAAGCTAGAGTATAAATTTTGTACCCGAGAAGGAAATCAGGACAAGTTTTCTTATTTACCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(9.9=100)
A:
NA
C2:
PF084417=Integrin_alpha2=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]