BtaINT0077895 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24151275-24151707:-
Coord C1 exon
chr2:24151592-24151707
Coord A exon
chr2:24151465-24151591
Coord C2 exon
chr2:24151275-24151464
Length
127 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
TTTTTTTTTTATTGTAATAGTCA
3' ss Score
6.49
Exon sequences
Seq C1 exon
GTGCACTTCTTAAAAGAGGGATGTGGAGACGACAACATATGTAACAGCAACCTTAAGCTAGAGTATAAATTTTGTACCCGAGAAGGAAATCAGGACAAGTTTTCTTATTTACCAAT
Seq A exon
GTAAGAATTGCGCTGTAGTACTAGCAAAAATGGAAAATGTCCCTGGGTTTGCAGTGGCTTTTTTTGAAGGGTTATTGCAAATCCATTGAGAACTTTGTTGTTTTCCTTTTTTTTTTTATTGTAATAG
Seq C2 exon
TCACAAAGGTGTACCAGAACTAGTTCTAAAAGATCAGAAGGACATTGCTTTAGAAATAACAGTGACGAACAGCCCTTCTAACCCAAAGAATCCCACCAAAGATGGTGACGACGCTCACGAAGCTAAACTCATTGCCACTTTTCCAGACACTCTGACTTACTCTGCATATAGAGAACTGAGGGCTTTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.344
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(8.0=100)
A:
NA
C2:
PF084417=Integrin_alpha2=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGATGTGGAGACGACAACA
R:
CAGAGTGTCTGGAAAAGTGGCA
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]