BtaINT0077897 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24150920-24151179:-
Coord C1 exon
chr2:24151096-24151179
Coord A exon
chr2:24151000-24151095
Coord C2 exon
chr2:24150920-24150999
Length
96 bp
Sequences
Splice sites
5' ss Seq
AGTGTAGGT
5' ss Score
3.31
3' ss Seq
CAGCTATTTCTGTTTCTTAGGTT
3' ss Score
8.1
Exon sequences
Seq C1 exon
GAGAAGCAGTTGAGTTGTGTTGCCAACCAGAATGGCTCACAAGCAGACTGTGAGCTTGGGAATCCTTTTAAAAGAAATTCCAGT
Seq A exon
GTAGGTGATGCCTTTACATACTGTATTTTAATTTTTAAAATACCATTGCAGTGTCAATATGTTCAGCCTATGGTAACAGCTATTTCTGTTTCTTAG
Seq C2 exon
GTTACTTTTTATTTGATTTTAAGTACAACTGAGGTCACCTTTGACACCACAGATCTGGATATTAATCTGAAGTTGGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(5.7=100)
A:
NA
C2:
PF084417=Integrin_alpha2=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTTGAGTTGTGTTGCCA
R:
TTCAGATTAATATCCAGATCTGTGGT
Band lengths:
151-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]