BtaINT0077898 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24150688-24150999:-
Coord C1 exon
chr2:24150920-24150999
Coord A exon
chr2:24150766-24150919
Coord C2 exon
chr2:24150688-24150765
Length
154 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGA
5' ss Score
7.69
3' ss Seq
TTTCCCTTTCATTTTTTCAGAAC
3' ss Score
11.89
Exon sequences
Seq C1 exon
GTTACTTTTTATTTGATTTTAAGTACAACTGAGGTCACCTTTGACACCACAGATCTGGATATTAATCTGAAGTTGGAAAC
Seq A exon
GTAAGAGATTCTTTCAACCTTCCATTCAGAATCATTTCGTGAAAACACAGCCAGTCAATGAATTGGCCTTTATCTAACTCATAAAAGGAGTGTAATTTAATGAGAAAACTGACTGTTACAATAAAACCCTATTGTTTCCCTTTCATTTTTTCAG
Seq C2 exon
AACAAGCAATCAAGATAATTTGGCTTCAATTACAGCTACAGCAAAAGTGGTTATTGAACTGCTTTTATCGGTCTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(5.5=100)
A:
NA
C2:
PF084417=Integrin_alpha2=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGTACAACTGAGGTCACCTTTGA
R:
GGAGACCGATAAAAGCAGTTCA
Band lengths:
138-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]