BtaINT0077903 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24147009-24147315:-
Coord C1 exon
chr2:24147217-24147315
Coord A exon
chr2:24147120-24147216
Coord C2 exon
chr2:24147009-24147119
Length
97 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
TGTTCTTCTTTTCTCCCCAGAAC
3' ss Score
12.04
Exon sequences
Seq C1 exon
GAGGCTCACAACTCAAGAAGGAAACGAGAAATTGCCGAAAGACAGACAGATGATGGCAGAAAATTTTCTTTATTTTCTGAAAGAAAATATCAGACCCTT
Seq A exon
GTGAGTATTTTTCAAGAGCTGTGAGTTTTCCAGGGGGTGGCGGGAAGGCCTTCCCCAGACCGTGGTGCTGTAAGTCCTGTTCTTCTTTTCTCCCCAG
Seq C2 exon
AACTGCAGCGTGAACGTGAACTGTGTGAACATCAAGTGCCCGCTGCGAGGGCTGGACAGCAAGGCCTCCGTGGTCCTGCGCTCGAGGTTATGGAACAGCACGTTTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(6.7=100)
A:
NA
C2:
PF084417=Integrin_alpha2=PD(2.5=32.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGAAAGACAGACAGATGA
R:
CTCCAGAAACGTGCTGTTCCA
Band lengths:
178-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]