BtaINT0077905 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24137018-24146909:-
Coord C1 exon
chr2:24146811-24146909
Coord A exon
chr2:24137144-24146810
Coord C2 exon
chr2:24137018-24137143
Length
9667 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
CTTTCTTTTACGCCCCATAGGTT
3' ss Score
9.77
Exon sequences
Seq C1 exon
GAATACTCCAAGATGAACTACTTGGACATTCTCGTGCGGGCTTCCATTGATGTCATTGCTGCCACCGAGAATATCAAGCTGCCCAACGCAGGCACTCAG
Seq A exon
GTTAGGATTCCATGGGCTTCACTTAGTTGCTCTCTCTCCTCCACCCCACGCCCATGGCCTAAGGACACGCTGTTCTGGACTCATGTCTCTCACGGCACTGATACTCCCTTTAAAGAGAAAGTAGGTCATGTCTTAAGGTGGTACCCACCCCAAGTTGTATTTCAGTAGAATCATGGAAGAAAGACGTGACTCGGGTCATCTCATTCTGCTGTGGATGGGACAGACTTGAGAGCTGTTGGCTCAAGGAGAGGAGGGGTGCACCTCCTAAGTCTAAAGATCCCACATCTTGTACCGCCTCTCATGCCAATGCCAATGTTGGCATACTCCTACTGATGGTAACCTCCCTGCGCTATGGGGGAGCTCTTGGCGTGTATGGCCAGTGGCAGTTATTAGAAACCATCTCTATATACGGATTGAGACTTGAATCTTCTAAGATCAGTTCCTGATTATGCCCCCTGGAACAAGTCCCAACATAAGTCCTCCTTCTCGGCCATGTAGCAGCCTTTGAAATAATTGAAGGAAATTGTCATGCTTTCTTGGACGTATCTCTCTTACTGTCTTCAAAGCTGACCACCCAGCTCTTCAATTATCTGTCCTGCCCGATGCAGCTGCACAGGTTCCAGATCTCTTCTCTTCCTGGGCCAGCTCCAGGAAGGAGAGCTGACGTGTGGTCTGCCTAGTTCAGCTTAACTTTACCTTCAATAGCCTCCCAGCTTCTATTAGTTCAGCCTAAAATGTGGTCTTTAAATGGTTGCTGAAGATGGTTTGCATTTCTGGCAGCTACTATTTTTCTGCTTGTGTTCTACTGAAACTTCCAGGTGTTTTCATCTGAATGTGCTGTCAAACTATATTTCCCACATCACACCCTTGAGCAGTTTTTTAAAATGTAAATACACGCCTTTAAGTGCATCCTCACATCTTGTGTGGTTTACTTTTGATCTGTTGTTTGGGCTTACAGCGTAATTTTGAGTCTTGATCATTTATTCTCTGATAACTTTCTTTCCTTGCAAGCTTTATCTTTTTAAAACCAAGAAGCATGGGTGTTTTCATGCAGGTAATTAAGAAAACTGTTGACCAGGACTAGCAGCAGAAGCTTGTGTATAGTAAAGGGTTCCTAGTTGGGGGGGGGGGGTCTGGCCCCATAGGGACTTGTATCAGGCTCTCAAAGTAAATGACTGCAGGTCACAGGTGGGAGTGTTTTGCAAAAGAGCGTGAATGGAGAAGAATGACTGTCCTAAAGCTGATCTACTGATGTACTTAAGGCAAATGTCTAGGCTTCAGTCCTTTGACCAGCTGAAATCCAGTGTGTCTCCCTGATGACCTTGGTTTCTGGAATATAGTGACCCTTAATTAAAATTTACCATCTCAACTAGAATACAAACATTTGTCTGGGCAAGTGCTAAATGGGGCAGGATGCTGGGGCATGTGGTGTAAACCGGGACTGTCCCATACTTAACCGGGATGTACCCTCACCTTGACCTTATGTTGTCTTTGCAGGTTACTCCTACCTTTCTACATCTTTTTAAAATTTTTAAATTTAATTTAATTTTTAGGGGGCACTGAGTCTTCCTTGTGCGCAGGCTTGTTGTGGCATGTGGGCTCAGTTGCCCCTTGGCATGTGGGATCTTAGTTCCCCAACCAGGGATTGAACCCATATCCTGTGCTTTGGAAAGCAAATTCTTAACCACTGGACCACCAGGGAAGTTCCTCTACCTTTACTAATAAGGCATCATAAGGACTGTCAAACCACACCCTTCCTGAGAATCCTTTCTCTGCCTCTCTGACTAAAGGCAGTTGCTATAACTTTATGTAGCTTTAATCAGCAATCCTGAGATTCACTGAGCTTCAAAGAGAAGAAAACTTGAGAGGGAAGAAACTAATATTAATAAAGCACTAATTAAATGTCTACCATCTACTAGATGCTTTACCCGTATACTATCATTTAAACTGCAGGAGAATGCCAAGGTAGACATTGTACCCACTTTACAAAAAAGGAAGCAGGCATAGACAGGGGATGTCATTTGGGGTCCTGGATTGAAATCTATGCCATTCTGGCTTCTGGGCCGCTATTCTTTGATTCTGTAATACTTGCTCCCCATTAAGTCCCCAAATCTCAAGTTCAGATGAGAAAACTTGAGTCCAGGGAAGGTTGTCTGTCCCTCAGGGTCACAGGACCAGCGTGTGGGGTAGAGGTAAGACCAGACCTTGGGCTTATGACTTCTCATCAAGTGCTCTTGTTTTCTTGAAGATGATGGAACTGAAGGCCATGGTGTCTAGACAATGAGGTTCTCTTGGGCATTTCATGTTCTCAGGGCTTTCAGAGCCCATGCCTACTAATGGGAATTGGAATCTTTGCTATACTACTACTTTATTTATTTAATAATTGGTAGATTTGAAAATGGATTAGTCTCATATCTGGAACCCATTTCTTTTTAAAACAGAGACTTTTTAATTTCTAGTCTTCTGTTACCTGTTCTATTAACTGATGTCTGAGATATAATAGCTCAGCTGTCATATCTACATGTTTCTTTAGAATTTTAAGGTGCAGTTTGGGGGTGTGGTCTAAAGTTTTCAAACTTAATTCAAGTGTCAAAATGCCTTCATTTTTTATTTCCTCACTTACTGAGGGTTTCAATTTCATTTTTATCTTGATTCTCTGTCTTTTCCAGTGTCTAGATTATTTTTCTTTGGACATGAAGCAAAGGAGGTTGAATAATTCAGCCTTGTCTTTTGGTCTTAATGTTGATATGTTTTCCCATTGCTTTTACTCTAATCCTGGCTTTAAAAAGATAAAAAAATCTTTGTTTCCTTATAACCCAACCAATTTTAAGAGTTTTGTGTTCAATTCTTTTTTAAAATATTTATTTTTTTATTGAAGGATAATTGCTTTACATAATTGTGTTGGTTTCTGCCAAACATTAACATGAATCAGTCATAGGTATACATATGTTCTCTCCCTCTTGAACCTTCCTCCCACCTGTGTTCATTTCTTAATAAAACACATTTAAGATATTGTTATAAGAAAAGTCAGGGAGAGCTGGTCACCCAACTGAACCAGATAAGATGGTTACTAAAATTTTAGCAGCAATTAAATTGATCCAGTTAACAAGCCAATTAACCATGGATGTACTGCAGCAGTGCCAGAGAAGCCTTCCTCACAAAAGTGCTAGAGAGGCAAAATTGAATAAGATAGTGTCAATTGTTAAGAATTTCATGGTCTAGGAGACAGTGAGTGGGGCTTGCCACGTGGTGCAGTGGTAAAGAATCCACCTGCCAATATAGGAGACACAAGAGATTCAGGTTCAACCCCTGGGTCAGGAAGATCCCCAGGAGTTGGAAACGGCAACCCACTCCAGTATTCTTGCCTGGAAAATTCCATGGACAGAGAAGCCTGTAGGCCACAGTCCATGGGGTCCCAAAGAGTCAGACATGACTGAATGAACACAGGAGAGAGTGAACCAGGAGAGATTTGTTGAATTCAGCCAAGGAAGGAGGAAGTTTCTTACTGGTTGTACTTACATATCCCCACTTCATTCCTTCCCAAAGAAAGGCAATGCCAAAGAATGTTCAAACTACTGCACAATTGCACTAATCTCACACACTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAATATGAACTTCTAGATGTTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCCGCTGGATCATCAAAAAAGCAAGAGTTCCAGAAAAACATCTATTTTTGCTTTATTGACTGTGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGAAATACCAGATCACCTGACCTGCCTCTTGAGAAACCTGTATGCAGGTCAGGAAGCAACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTACATCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTCTATGCAGAGTACATCATGAGAAACGCTGGACTGGAAGAAGCACAAGCTGGAATCAAGATTGCCGGGAGAAATACCAATAATTTCAGATATGCGGATGACACCACCCTTATGGCAGAAAGTGAAGAGGAACTAAAGAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAGCTCAGCATTCAGAAAACAAAGATTATGGCATCCAGTCCTATCACTTCATGGCAAATAGATGGGGAAACAGTGGGAGCAGTGGCTGACTTTATTTTTGGGGGCTCCAGAATCACTGCAGATGGTGATTGCAGCCATGAAATTAAAAGACGCTTACTTCTTGGAAGGAAAGTTATGACCAACCTAGACAGCATATTCAAAAGCAGAGACATTATTTTGTCAACAAAGCTCCGTCTAGTCAAGGGTATGGTTTTTCCAGTGGTCATGTATTGATGTGAGAGTTGGAATATAAAGAAAGCTGAGCACCGAAAAATTGATGCTTTTGAACTGTGGTGCTGGAGAAGACTCTTGGACTGCAAGGAGATGCAACCAGTCCATCCTAAAGGAGATCAGTCCTGGGTGTTCATTGGAAGGACTGATGTTGAAGCTGAAACTCCAATACTTTGGCCACCTGACGTGAAGAGCTGACTCATCTGAAAAGACCCTGATGCTGGGAAAGATTGAGGGCAGGAGGAGAAGGGGATGACAGAGGATGAGATGGTTGGATGGCATCACCGACTCAATGGACATGGGTTTTGGTAGACTCCGGGAGTTGGTAATGGACAGCGAGGCCTGGCATGCAGCAGTTCATGGGATCACAAAGAGTTGGACACGACTGAGCGACTAAACTGAACTTCATTCCTAAGGAATAGGAAGAGAGTGGGTAAACTTCCTGCCTGCCAAAAATGAGAAAGAGTGTGATAAGTGGAAGTAGGCATGTTATTCTTCAGGGTGGAGGAGATTTTCATTTTTTGGTTCTAAATTCAGAGAAGGACTTGAGATGTGGATTCTTCTATAAGATGAATTTCTAATATGAAGAATACTCACTAAGGGGATGGTTTCCTTAATAGTTTTGTAAAAGATAACAAAAATACTTTCACTGGGTGAGTATCTTATACTAAAGTTCAATGAGAGTGGAGTGTATTACATTAAAAAGTGATTTAGGGAAACAGCTTTGGCTGGGGGAAAGCTCATGTGGTCTCAGCACTCCTCACTGGTGATGGAATTTAATGCATCAGCAGAATTAAACCCTTTTCCTCTGGACACATGATGGATGAGGTTCACATGCACAGGTCATCCCTGTGGAAATGCCTAGATTTTAATGCAAGCAAAACAATTTTTTTGTTTGTTTGTTTTTGAAGTTGGAGTAGTTTCTACTGGCCTGAACCTGTCATTGTTCATCAGTAATAGTTGCTGTGACGAGATGAGACAAGGTGTCCAGAGCTCTGGGAATCTCAGCTCATAGTTTGTCTGCCCCCTCCTGATTCTAAAGCCAGCTCCACTCCCCTCCTATTCTCAGTCCCAGCTGGAGAATGACTGTCAAAATGCACACGCACACACCACACAGAGTTGACAGTTTAAGGAAACAAACAATAAAGTCTTGCTGACCGGCCTCTCTCGCCTTCCTGCGGCGTGGCCTTACACACACACACACTGAGTTTGCAGAGCACATCCGAACTTTAAATGTGTGGTCCAGAGCCTAGCATTCGTCCTCAGTCTGATGCACAGTGACTTGTTTTCGTTTCTAAAAGGCTCCAAGATCTGATTTGAATGGTAGCCAGACCTGGGGCTTAGAGCTCTCGGCTGAGTTCCTGCTTACACTGCACCCGACTCCTAACCCCACAAAATAAAAAACTACCTTGTTCAGCCCTTATGGCTGTCGGATTGCAGCAGTTTTGGGGTGTGGTTTCCCTCTAAGAGCATCCATTTGAAAGACTGGTACCGTGGTGATAGGGCTGATTCCTCTGTCTGTGGACCAGTGTCTACTCTCCACTTCAAAAGGGTTCATCAAGGCTTATTGGTAAAAATGAGAATGGCCCTTCCAAGTCATCACCTTGCCCATGGATACTGTGTGGCTTGCCTGTGCTACATACTAGGGAAGCAGAGTTAAATGAGATAAAGCATGTGTGTGTGCATGCTGCTAAGTCGTGCCCGACTTTGTGCAACCCCATGGACTGTAGCCCGCCGGGCTCCTCTGTCCTTGGAATTCTCCAGGCAAGAATACTGGAGTGGGACCTGTTCCCTTCTACAGGGGGTCTTCTGGACCCAAGGATTGAACCTGCATCTTTTGTGTTTCCTGTACTGGCAGAGGATTCTTGACCACTGTGCACCTTGGAAGCCAAGATAAAGCACAGGCTGGTGGAAGTAATCTTTTTAGTTTAGGATTGTCTGACTTAGCACTCATATCAACTATGTTATTTCTTTACTGGTCTCTCACCATTCTCTCTCCCCTACTTCATGGGTACCTCTCTGCTTCAACCAGTAATCTCAAGAAAGAGTTGTTTTAGCTTAAAGCTAGGACACCTGTGGAGGTGATGGTATTCCAGTTGAGCTATTTCAAATCCTGAAAGATGATGCTGTGAAAGTATTGCAGTCAATATGCCAGCAAATGTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACTGCACAATTGCACTCAGCTCACACACTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAATACATGAACCGTGAACTTCCTGATGTTCAAGCTGGTTTCAGAAAAAGCAGAAGAACCAGAGATCAAATTGCCAACATCCGCTGGATCATGGAAAAACCAAGAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTGACTACGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAACCTGTATGCAGATCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTACGTCAAGGCTGTATATTATCACCCTGCTTATTTAACTTCTACGCAGAGTACATCATGAGAAACGCTGGACTGGAAGAAACACAAGCTGGAATCAAGATTGCCGGGAGAAATATCGACAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAGGAACTCAAAAGCCTCTTGATGAAAGTGAAAGTGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGGAAACAAAGATCATGGCATTCGGTCCCATCACTTCATGGGAAATAGTTGGGGAAACAGTGGAAAGTGTCAGACTTTATTTTTCTGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGGAAAATTACGACCAACCTAGATAGCATATTCAAAAGCAGAGACATTTGCCAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGGAGGCTGAGCGCCGAAAAATTGATGCTTTTGAACTGTGGTGTTGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCCAACTGGTCCATTCTGAAAGAGATCAGCCCTGGGATTTCTTTGGAGGGAATGATGCTGAAGCTGAAACTCCAGTACTTGGGCCACCTCATGCGAAGAATTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGACTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGATGTGGGTCCTGGTGAACTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCGATTCATGGGGTCACAAAGAGTCGGACACAATTGAGCGACTGAACTGAGGACACCTGTTGGGGAAAGGGGAGGCAAGAGGAAGTGAGTCAGGAGGCCCTCCCCTGGGCTGAGAGCTTAAGTGAAACTTCATTGAGACCATAACAGGAAACATAGTAGCTGATAAAGGTTGTTTATGTGGTTAGAGTTTAGAAAACTCTTAATGTGAATTCTGTTCCTGTTAAAGATGTTTAAAGAAAAGCAGTTCCTGCTTTTAAGTATATTCTGTAAGAGCAGGTTGAAAACTTGTTTTCTAGTATAGATAGAAGTACTTTAAGAGTTTTTTTTTTTTTTTTTAAGTGTTCTAGTATAGTAGTATTGGATCACAGTGTAGACATGGAAGCATTTTAGGCAGCATCCAGAATTCAACACTAATGTAGAATACTTATCTAGAAACACTTCTGAGGAGTTAAATTGTTCTCTCTTAAGTTTTCTTTACCCTTCACTTGATATTCTTTAAATTCAAAAATAGCAGAAACTTCAAAGTGATAGATGAATAATCAGTATAGTTTACAAAATCATATTTATAGCTTTCACCAGGTCTTTTGTAAGCTTTGAAGATTAGTTTCCTGAAAAAAACCTTCTGGCATCACAGAAATCCACTTGAATTCTAAACTCAAATAACCAAATTGTTGCAAATTACCATAAGCAACTTTTTAGATTTCTGAATAAACACTTCTATTCAATTGGTATTTGCCAGCTATCAAGTATTTAGAGCTTAAACTTCTCATCAGCTGCTGCTTAAAGCTGTAAGCTGCCTCTGAATGAATCCAGAGTCTCGTTTGTATGTACACATTGTCGTAATAAATGACTGCAAGCCATTTCAGAAAATTTTATTCTTTACGAGCATCTTTAGTTTGCTATCCAAACTCAGGTTTGGCTTCTCATAACCCAAGAATCCAATACTGAGAGACAAGTGTTAGGTAAAAGAAAAGAAAGCTTTATTGAGGAATCTAGCAATCCTGGGGAGAAGGTAAACTCATGTCCCAAAGAACCAACTGCCCAGGTTTTGTTCTGAGATTACTTAGGGAAGAGAGGAAGGGGCTATGTGCTGGGGAAGAGGTAATCTTCTGTTTTCAAAGATGACCATCACAATCCTGTGGTTCCAAGTAACTGTCAGGTTTGAACCATAAAGCTTTGGTCTGCTGAGAGGGCCCCACTGGGTCCTGCTTGCTTTTAACCTTAAGGGAAAATTAGAATGGTGTCAGTAATGCAGCTCCATTCCTCTTATATTTCATAACATCTTTAAAATATGAGTGAGGAATGTAGGCTAATTGTGCATAAATGGACCGTTTTGTTGCCATTGTTGAATGCTTGATTAAGAGAGGGTGATTGTTCTCAAAAAGATACCAGGTTATATTAATGTAGATATAACAAGATTGGTTGTATCCCTCTGGGTAATTGTTGAAACTTGCTGTTGATTAAATGATGGTTCATTATACAATTTTCTCTACTTTTATTGATTATAAAAATTTATAAAAGATAAGTTAGCACAGAAGCAATTATTTCATCAAAACATAATTCAGCATTTTCCAGGTTCTGGCAAAAGAGCTCCAAGAAATGCCTCTTGAAGCAATATTCCATTACTAAAGGAAAGGAACTCACACCAAAAAGACACGTCATCCATCTGTAGGCTACATTGACCAAGTGTATCTAGAAGCAGAATTAGTGATCCAAACTCAGGGTTTAATTCTCACCCGAGTTTGTAATGGTCTTGCTTTCTTTTACGCCCCATAG
Seq C2 exon
GTTCGCGTGACTGTGTTTCCCTCAAAGACTGTAGCTCAACATTCAGGAGTACCTTGGTGGATCATCCTAGTGGCCATTCTTGCTGGGATTTTGATGCTTGGTCTATTAGTATTTTTACTGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF151761=LRR19-TM=PU(51.4=85.7),PF0035715=Integrin_alpha=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]