BtaINT0077908 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24173155-24175154:-
Coord C1 exon
chr2:24175075-24175154
Coord A exon
chr2:24173411-24175074
Coord C2 exon
chr2:24173155-24173410
Length
1664 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CTTTATTCATCTGCTTGCAGACA
3' ss Score
8.33
Exon sequences
Seq C1 exon
CTGACCCTTCATCGGAAAGCAAGGAAGATCAGTGGATGGGAGTCACTGTCCAAAGCCAGGGTCCAGGCGGCAAAGTTGTG
Seq A exon
GTAAGTATAGAGAGATGTGTCCATTCCGCGCTGAGTGCCTGTTGTGTGCTAGTGCTGGGCTTATAGCAGTGAACAGAGCAGACAGCTTCCGCCTGCCTAGAGTGTACATTCTAGAAAACTGACTGCTATACAGCAGGAATTGATGTCAAGAGGAAATCAAACCATTACTTTTTCTGTGATTCCTGATTTACTTTGAAACGGCTCTACAAGCTGCTTTTCCTTATAACGTTTAGATCCAAAAACCTTACTTAAAAGCCTTTACAGAATGTCCCTACAACTTTAGGTGGTCTTGAAAAAGCAAAGCAAAACCGTACATGGTTTTTGTCCTAGGAACTATGCAGCTATTATAGATGAGTTACAAAAATATGGGACTGGTCATGCAAAGTAAGGATCAGATCATTTTAAACTCTTTATTTTCTGGGCTACTTCAGATAGAAGTGGTAGCCGAGAAAAAAGGGTTGTTCGATGGAATGTGTTAGGTGGCCTTGGAGGTGCCAGACTGGATCACGATGAAATTTCCGTCTCTTTCAAAATCTGGTTGCTGTAACAAATTTGTGTAGAATTTTGAGAAAAATGAGAATTTTACCAAGTATTGAATTTTTACATCTGAGAAGATGCATTATAGGACATTGACTTGGACATTGTAAAGTATTTTCAGCCTGTGTTATATGGAGGGTGGCCATGAATACCCATATGTGAAAATTAGAGTTTATTTAGTCTCTCCTGGCAGTATGATTTTTCTCTGCCTTTTTAAAAGGCTTCTCTCTGCCTTTGAAAATAAACTTAATCTCAGAGTTTAAAGAATAAGTTAAGATAGGATTGATTATGAGGAAATAGTATGGATAAAAGGAAAATGCCTTTGTTTTAGCCCAATTCCTGTGAAAATATGTCCACCACGATTTCTCTCCCCTGGAACATGTTCCTTCTTTTCATGAATACACACAAGGTTTATGTAGCCACTAAAAGCCAATTAAATTGAGAAGATGAAATAAGGTGTTTCCCATTGTTTATGTGACAGGTAAATTTACACATAAATTGCCTGTGAATTGCAGACTGTTGTCGTTTAAACACTGAGTCGTATGTGTGCTAAGTTGCTTCAGTCGTGTGCGACCCTGTGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTAGAGTGGGTTGCCACGCCCTCCAGGGAATCCTCCTGACCCAGGGATCAAACCTGCATCTCTCATGTTTCCTGCATTAGCAGGCAGGTTCTTTACCACTAGCGCCACCTGAGAAGTCCCACTAAGTCATATCCGACTCTTTTGCGCCCGCGTGGACTGTAGCCTGCTAGGCTCCTCTGTCTATGGCATTTCCCAGGCAAGAATACTGGAGTGGGTTACCATTTCCTTCTCCAGGGGATTACAGATTGGCCTTCAGTATTTAGATTGCAGCATTATTCTCTGGGTGACGGTAAGACAGAAGTCCTGTGCTAGATAATGGTCTCCTTCTGGCAACTTTGGGGAATATTTGCTGGTTTTCTGACCTGGTCTCAGGATGAGGGCACATTTAACATCCCATTTAGAATTAACCTCTTGATTGTTGACAATTTCATTGGTTTGTAGTGAAAAACGTCAGGTTTGCCAACACATGTGAGCTACTTTATTCATCTGCTTGCAG
Seq C2 exon
ACATGTGCTCATCGATATGAAAAAAGACAACATGTTAATACGAAGCAGGAATCCCGAGACATCTTTGGAAGGTGCTACGTCCTAAGTCAGAATCTCAGGATTGAAGATGATATGGATGGAGGAGACTGGAGTTTTTGTGATGGCCGGTTGAGAGGTCATGAAAAATTTGGTTCTTGCCAGCAAGGTGTAGCAGCTACTTTTACTAAAGACTTCCATTACATTGCGTTTGGAGCCCCAGGCACTTACAACTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCTTCATCGGAAAGCA
R:
TTCCAGTTGTAAGTGCCTGGG
Band lengths:
334-1998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]