BtaINT0078193 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018169 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr19:56490015-56490889:-
Coord C1 exon
chr19:56490783-56490889
Coord A exon
chr19:56490049-56490782
Coord C2 exon
chr19:56490015-56490048
Length
734 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CCGCCCTCCTTGCCTCCTAGGCC
3' ss Score
9.72
Exon sequences
Seq C1 exon
AATGCCCCCCGGGCACCTTCTGGTGGCTCATCCCCCTGCTCATCTTCCTCCTCCTGTTCCCGGTCCTGCTGCTGCTGCTCTGCTGGAAGTACTGTGCCTGCTGCAAG
Seq A exon
GTGGGGGCTCCCCTGGTCCCCACCCCACTGGGGTCCCTCTAGGGGGCAGAGGCCAAGGGAACCCACACGTTCCGCCCAGCTCTGGTGCCGTCCCCACCCCAGCCCCTCGCCTCTGCCAGCCACCAGTGGCTGGATTCCTGGGAGTCCCTGGCCCGGGGGTCAGCCGCATGCAAAGGGTCACGAGAACCAACAAGAAGGAAAGGCTCTGCCCACCAGGAGCTGGCCATCTCCCTGGGAAGAAAGACCGGAGACAGGAGAGTGCAGAGCATGGCCTGGCGTGGGATACTGAAGGGGGCAGAGGTGCCCCTACGGCAGCCCCCAGGGTCGTATTCATGCGTGTTACAGGGAGAAAGCGTTCTGTGATCAAACACTTTTGAGAAAGCGGTTTCTCCTCTGCAGGGCTTCTCGGAGCCTTTGAGCTAGCTGTTTGCATAAGGAAACTACATGGGGAAGGAATTCAGTGCTTCCCAAAGGGGTTTGATCACAGAACCTTTTCCTTTCCAGAGTAGATAGCGGGACCAGAGTCCCATGGCATGCATTTTGGGTACCCTCTGCCCCTGTTCGCCTCTGTGCCCACACCCAGGCCCCTGTAACTGCCTGGATATCCCAGTGTCTGGGGAAGGCACTGCTGACCCCTCTGGACCACTGGCGTGGGTGGGAGGCGGTGGCCGGAGGGACTTCCCTGGGCCGGTGCGGCCGTCTCAGCTCTCATCCCCGCCCTCCTTGCCTCCTAG
Seq C2 exon
GCCTGCCTGGCCCTTCTCCCTTGCTGCAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018169:ENSBTAT00000042566:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=PD(7.0=16.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]