RnoINT0076379 @ rn6
Intron Retention
Gene
ENSRNOG00000005580 | Itgb4
Description
integrin subunit beta 4 [Source:RGD Symbol;Acc:2928]
Coordinates
chr10:104540145-104542040:+
Coord C1 exon
chr10:104540145-104540228
Coord A exon
chr10:104540229-104542006
Coord C2 exon
chr10:104542007-104542040
Length
1778 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CTCTAACTCTTATCTCCTAGGCC
3' ss Score
8.48
Exon sequences
Seq C1 exon
TGGCTCATTCCCCTGCTCATCTTCCTCCTGTTGCTCCTGGTGTTGCTTCTGCTGCTCTGCTGGAAATACTGTGCCTGCTGCAAA
Seq A exon
GTAAGTGCCCGGCCCAGGCCTCCTGGATGAAAGATTATAGAGGATTGAGAGCGGCCATGGCAGAGCGGACCGCATCTGCCTGACTTTACTGCCTCCTGCTTTGGGGCCTCAGTGGCCAGAGCCGCAGAGTACTTATCATGGAGTTGGTCCCATGTGATCCCCCTGTGAACAAGGCGGGCAGAAGCTAACAATCAGGGGCTGTCAGCAGAGGCAACAGACTTGAGGGGTGCATAGCATCAGAATGCAGGGTTGTAGGGGCAGAGACCACATACTGCTCTAACCCATGGCAGTGTGGGATGTGTGTGTGGTACACAGAAGTGGGTTCTATGATCAAATTTGTTAGAGAAGTATGTACTCCTCAGAGCCTTCAAATGTCTACATAATGGGTTAGGAATGTAGCTGAGTTGATGTTGGTCTTGCTTCATACTTATGAAGCCCTGGACTTGATCCCAAACATGCCATAACACTGGGGCAGAGCTAGATGTGGAGGTGAACAACTTTAATCCCAGCAGCAGTCAGGAGGCAGAGGCAGGGGGATCTTTGTGAGTTTAAGGAGAGCCTGGTCTACATAGCAAGATCCAGGCCAGCCAAGGCTGCATAGTGAGACTTTGTCTCAAACAAACCAGAGCGGGAGGGGTGGGGGAGGGAGAGAGACAGAGACAGAGACACAGAGAGACAGAGACAAAGAGACAGAGAGAGACAGAGAGACAGAGAGATTCCTATCATCTGGGGATAAGAATGCAGGAGTGTGCCAAGGTTGTCCTCAACTACATAGCAAGTTTGAGGGCAGCCTGGGCTACATGAAAACCTGTTTCAAAAATAAATAAGCAGAGACCCAAGCACGGTGGCCCACACTTTTAATCTCAGAACTCAGAAGCAGGCTGATCTCTGTTAGCTCCAGGCCTGGTCTACAGAGCAAGTACCAGGCATACCAGGACTACATAGAGGGGGCCTTGTCTCAAAATAAATAAAAATTAATTGTAAAAATTAAAATAGAGTTGGTAAGATGGTTTAGCAGGAAAAGGCACCAGCTGCCAGCTGCCATAGCTGACTGACAACCTTACTTTGGTTTCTGGGACCCACGTGGTGGAGAGAACCAACTCCTATCAGTTATCCTCTGACCTCCATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCCTGTGTGTGTGTGTGAAGGGGGCAGCGTTTCTCTGTGTAACAGCTCTGGCTCTCCTGGAACTCACAGACTCACAGAGATCCGCCTGCCTCCACCTCCTGAGTGCCGGGATTAAAGGTGTGCGCCACCATGCCTGGTGAAAGATTATTTTTAAAGGAAGGGGAGGGTGAGAGAAGTAGGGTCTGGGAGGATATCTCAGTGAGTCAGAGCATTGCTGAAGCAGCATGAGGACCTGACTTTGAATCCTTATCACCTCGTAACCCCAGTGCTGTGGGAGGCCACCAGCCTATCTCTGGGTTCAATGATAGATCCTGTGTCAAAGGAATAATGTGGAAAATGGCAGAGCAGGATACCTGGTGTCCTCCTCAGACTCCTGCACATACACACACACACACACACACACACACACACACACACACACACACATATATACACACACTCACACACATGTTCACACATTATACACACACGTGTCCTCCTCAGGCTCCTGCACATGTTCGTGCATGCACACACACATACACACACACTTCTAGTGAAAAGACTTGACGTGGAGGTGCCTGGAGTGGCCTATCTAACCTGGGACAACCATCCTAACCTCACCTCTAACTCTTATCTCCTAG
Seq C2 exon
GCCTGCCTGGGACTTCTTCCTTGCTGCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005580:ENSRNOT00000065339:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]