HsaINT0082877 @ hg38
Intron Retention
Gene
ENSG00000132470 | ITGB4
Description
integrin subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr17:75737538-75739705:+
Coord C1 exon
chr17:75737538-75737644
Coord A exon
chr17:75737645-75739671
Coord C2 exon
chr17:75739672-75739705
Length
2027 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCACCCACCTTGTCTCCTAGGCC
3' ss Score
8.87
Exon sequences
Seq C1 exon
ACTGCCCTCCGGGCTCCTTCTGGTGGCTCATCCCCCTGCTCCTCCTCCTCCTGCCGCTCCTGGCCCTGCTACTGCTGCTATGCTGGAAGTACTGTGCCTGCTGCAAG
Seq A exon
GTGAGCACCCAGGGTGCCTCCCAAGGCCCCACATCCCAGGGTCCCCACCCCAACAGGGCCCCCACCCTCCACCAGGGTCCCCAGTCCCCGCCTGAGTTCTCATCTCCCCAGGGTCCCCAACCCCTTCCTGGGTCCCCACCTCCCCAGGGTCCCCATCCCAACAGGGTCCCCATCCTCCACCACGGTCCCCACCTCCCCAGTGTCCTCAACCCCCTCCTGGGTCCCCACCTCACCAGGGTCCCCTCTCTGACAGGGTCTCCACCCTCCATCAGGGTCCTCCTCAGGGTCCCCAACCCCCACCAGGGTCCCCAGCCTCTCCACCCACCATCCCCACTCCTGCAGCTTTCTAGCCAGAGGCTTCAGCCCGTAGAGTCCAGCTGTCTGGATTCTGGTCCCAGCTCTGTGACCTTGGGCAAATTACTTAATCTCTCCATGCCTCAGTTCCCTCATCTGTAAAATGAAGATCATAGAATTGACCTCAGAAAGTGGAGCTGAAGCTTAAATTAGTGAAGTTCAGAAGGGACTGACCCATAGCATGCACCATCGCCCCCACCCCCACCTTGGCAAGACCCACACCAACCCCATCCAGCTTCCGGAGTGACAGTAATGATGATGACACCCATGAGCTCTTAGCCCGAGTCATCCTGGAGCCCCAGCCCCCAGCTCAGCCCTTGCCAGCATCCGTTCTCTGCTTAGCTCAGTGTTCCTCTTTGTGCTGTCGCCACAGCATGTCCACGTGACTCCATTTCCCCGCCCCCCATCACCCCATGAGGTCAGTGGGGCAAGGTCACCATGCCCTATGACAGATGGAGAAATTGGGGCTGAGAGGCAGGTGATAAATGCACAGTCCTCAGAAGGGGCTGAGGCAAGCTGAGCCCACATCTTCCCCAGCTCTAGTGCCCGCCCAGGACCCCCACTCCATCAGCCATCAGTGGCCAGATCCCTGAGAGCACCTGCTCTGGGGTCAGCCACGTGCAAAAGGCCTGGGAGCCACAACAGGGAAGAAAGGGCCCTGCCCGCCCGCAGCTGGCGGTCACTGGGGAGAACAGACAAGAGAAAGCGTGGAGGATGGCATAGCTCAGAGTAGGGATTGTAGGCGGCAGACCACACTCCGTAGTAACCCCCAGTGTTGTGGGATATTAATGTGCATTACATAGGCAAGGAGTTATGTGATCAAATAGGTTTGAGCTAGGCACGGCTGCGCGTGCCTGTAGTCCCAGCTACTCAGAAAGCTGAGGCAGGAGGATCACGAGTCTGGGAGTTTGAGGCTACAGTGAGCTATGATTATGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCAAAAAGAAAAAAAAAAAGAAGGTTTAAGAAACAAGTTTCTTAAATTTAAGTTACAGTGGCTCACACTTGTAACCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACTTGAGGTCAGGAGTTGGAGACAAGCCCGGCCAATATGGTGACACCCCATCTCTACTAGAAATACAAAATTAGCTGGGCATGGAGGTGGATGCCTATAATCCCAGTTACTAGGGGGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTAGAGGTTGCAGTGAGCCGCGATCGTGCCACTGCATTCCAGCCTGGGCAACAGAGCGAGACCCTGTCTCAAAAAAAAAAAAAAGAAAAGAAACAAGTTTCTTCTCTGCAGGACTTCTCAGAGGCTTTGATAAAGTCCTGTGCCTAACCTGCAAGAGGGGCATGGGGAATGAATTCAGTGCTTCCCAAGTGAACCTGACCACAGAACCTTTACAGAGCACCCGGCAGGATGAGAGTTCCACGGCGCAAACTTTGGGAACCCTCTGCCCCCATCCCCCTCTATGCCCTTGTGTGCCATGCTTACACCCTGCTACCACCTGGATATTCTGGTGTCTGGGGAGGCACTGTCACCCCTCTTGACCATTGGCATGGGGCGGGGTGGCTGGAAGGGCTTACCTGGGCCAGGGCAGCTGTCTCAGGCCTCACCCTCACCCACCTTGTCTCCTAG
Seq C2 exon
GCCTGCCTGGCACTTCTCCCGTGCTGCAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132470:ENST00000200181:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=PD(7.0=16.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development